View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16598_low_20 (Length: 236)
Name: NF16598_low_20
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16598_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 44793008 - 44793128
Alignment:
| Q |
17 |
acacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagatgttccaaaaactcctgaggcaattcatcgtctaccattgacgatgcttctc |
116 |
Q |
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| T |
44793008 |
acacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagatgttccagaaactcctgaggcaattcatcgtctaccattgacgatgcttctc |
44793107 |
T |
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| Q |
117 |
ctttcttagttgacgcttctg |
137 |
Q |
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| T |
44793108 |
ctttcttcgttgacgcttctg |
44793128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 44797896 - 44797984
Alignment:
| Q |
17 |
acacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagatgttccaaaaactcctgaggcaattcatcgtctaccattga |
105 |
Q |
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| T |
44797896 |
acacgaccaggttcaatgagatccaatcgcagggcgcgcaagattagatgttgcaaaaactttggaggaaattcatcatctaccgttga |
44797984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 44787235 - 44787274
Alignment:
| Q |
61 |
tagatgttccaaaaactcctgaggcaattcatcgtctacc |
100 |
Q |
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| T |
44787235 |
tagatgtcccaaaaactcctgaggcaattcattgtctacc |
44787274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 236
Target Start/End: Original strand, 44793204 - 44793235
Alignment:
| Q |
205 |
caccatataaaattgataaagaaggataacac |
236 |
Q |
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| T |
44793204 |
caccatataaaattgataaagaaggataacac |
44793235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 44805783 - 44805891
Alignment:
| Q |
17 |
acacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagatgttccaaaaactcctgaggcaat---tcatcgtctaccattgacgatgctt |
113 |
Q |
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| T |
44805783 |
acacggccaggctcaatgacatcgaagcgtaggccacgcaagattagatgttccagaaactttggaggaaattcatcatcatctacctttaacgatgctt |
44805882 |
T |
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| Q |
114 |
ctcctttct |
122 |
Q |
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| T |
44805883 |
ctcctttct |
44805891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 44789461 - 44789509
Alignment:
| Q |
17 |
acacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagat |
65 |
Q |
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| T |
44789461 |
acacgaccaggcttaatgagatccaatcgtaggccacgcaagattagat |
44789509 |
T |
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