View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16598_low_22 (Length: 201)
Name: NF16598_low_22
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16598_low_22 |
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| [»] scaffold0781 (1 HSPs) |
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Alignment Details
Target: scaffold0781 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 6020 - 5857
Alignment:
| Q |
20 |
aaatcatgtacaacattcaaaaactttttgtagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactaggagg |
119 |
Q |
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| T |
6020 |
aaatcatgtacaacattcaaaaactttttctagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactagaagg |
5921 |
T |
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| Q |
120 |
aaacatggtgttttgttgaaatcttccgtaacaatttattctaaagaaatggagaggatctgca |
183 |
Q |
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| T |
5920 |
aaacatggtgttttgttgaaatcttccgtaacaatttattctaaggaaatggagaggatctgca |
5857 |
T |
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Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 2217564 - 2217401
Alignment:
| Q |
20 |
aaatcatgtacaacattcaaaaactttttgtagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactaggagg |
119 |
Q |
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| T |
2217564 |
aaatcatgtacaacattcaaaaactttttctagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactagaagg |
2217465 |
T |
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| Q |
120 |
aaacatggtgttttgttgaaatcttccgtaacaatttattctaaagaaatggagaggatctgca |
183 |
Q |
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| T |
2217464 |
aaacatggtgttttgttgaaatcttccgtaacaatttattctaaggaaatggagaggatctgca |
2217401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 1293647 - 1293533
Alignment:
| Q |
50 |
tagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactaggaggaaacatggtgttttgttgaaatcttccgta |
149 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||| |||||| |||| || |
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| T |
1293647 |
tagtttatttctagatttctaattgctagtttgttacattgcagttatttgtggagaaattacacgaaggaaacgtggtgttttgatgaaattttccata |
1293548 |
T |
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| Q |
150 |
acaatttattctaaa |
164 |
Q |
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| T |
1293547 |
acaatttattctaaa |
1293533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 169
Target Start/End: Original strand, 22798322 - 22798441
Alignment:
| Q |
50 |
tagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactaggaggaaacatggtgttttgttgaaatcttccgta |
149 |
Q |
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|||||||| |||| || |||||| ||| ||||| |||||||||||||| |||||||| |||| || |||||||||||||||||| |||||||||| || |
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| T |
22798322 |
tagtttatctctaatttgctaatctctaatttgtcacattgcagttattcgtggagaagttacaagaaggaaacatggtgttttgacgaaatcttccata |
22798421 |
T |
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| Q |
150 |
acaatttattctaaagaaat |
169 |
Q |
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||| ||||||||||| |||| |
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| T |
22798422 |
acagtttattctaaaaaaat |
22798441 |
T |
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