View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16598_low_3 (Length: 577)

Name: NF16598_low_3
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16598_low_3
NF16598_low_3
[»] chr6 (12 HSPs)
chr6 (1-285)||(26063838-26064123)
chr6 (1-285)||(26083807-26084092)
chr6 (284-486)||(26148173-26148375)
chr6 (284-554)||(26063550-26063809)
chr6 (284-554)||(26083519-26083778)
chr6 (284-561)||(25515228-25515516)
chr6 (93-285)||(25515545-25515737)
chr6 (49-286)||(25454973-25455219)
chr6 (284-486)||(25454743-25454946)
chr6 (253-285)||(25318711-25318743)
chr6 (253-285)||(26148404-26148436)
chr6 (6-37)||(25455633-25455664)
[»] chr8 (1 HSPs)
chr8 (104-164)||(33200899-33200959)
[»] chr2 (1 HSPs)
chr2 (105-164)||(3392153-3392212)
[»] chr4 (1 HSPs)
chr4 (70-150)||(17848205-17848285)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 26064123 - 26063838
Alignment:
Q  1 gcggcagctcgtagaccgtaaccaaggtatctatacaactaactcccaatttcgctagaatatctgctcaagcattgccctcaggaaaagtctgatggag 100  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26064123 gcggcagcatgtagaccgtaaccaaggtatctatacaactaactcccaatttcgctagaatatctgctcaagcattgccctcgggaaaagtctgatggag 26064024  T
Q  101 agaaaaattccaatctttcttcatgtaagctctgataa-tctccaacatattggcataatggtgaaagtgatgagtgttcattgatcctaactgcaccac 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26064023 agaaaaattccaatctttcttcatgtaagctctgataaatctccaacatattggcataatggtgaaagtgatgagtgttcattgaacctaactgcaccac 26063924  T
Q  200 gtgaagagaatcataatagcatataaacttccgggctttccaccacaacttgagaccaacaaggagagcctgaatctctgcatgaa 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  26063923 gtgaagagaatcataatagcatataaacttccgggctttccaccacaacttgagaccaacaaggagatcctgaatttctgcatgaa 26063838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 26084092 - 26083807
Alignment:
Q  1 gcggcagctcgtagaccgtaaccaaggtatctatacaactaactcccaatttcgctagaatatctgctcaagcattgccctcaggaaaagtctgatggag 100  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26084092 gcggcagcatgtagaccgtaaccaaggtatctatacaactaactcccaatttcgctagaatatctgctcaagcattgccctcgggaaaagtctgatggag 26083993  T
Q  101 agaaaaattccaatctttcttcatgtaagctctgataa-tctccaacatattggcataatggtgaaagtgatgagtgttcattgatcctaactgcaccac 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26083992 agaaaaattccaatctttcttcatgtaagctctgataaatctccaacatattggcataatggtgaaagtgatgagtgttcattgaacctaactgcaccac 26083893  T
Q  200 gtgaagagaatcataatagcatataaacttccgggctttccaccacaacttgagaccaacaaggagagcctgaatctctgcatgaa 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  26083892 gtgaagagaatcataatagcatataaacttccgggctttccaccacaacttgagaccaacaaggagatcctgaatttctgcatgaa 26083807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 284 - 486
Target Start/End: Complemental strand, 26148375 - 26148173
Alignment:
Q  284 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgtt 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  26148375 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgcc 26148276  T
Q  384 atgctagaagcaataactacattgcagtagcaccctctttaaacaaacatgtattattccattatagtcgaaaagaccgaccatagaaacttagataagg 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26148275 atgctagaagcaataactacattgcagtagcaccctctttaaacaaacatgtattattccattatagtcgaaaagaccgaccatagaaacttagataagg 26148176  T
Q  484 aac 486  Q
    |||    
T  26148175 aac 26148173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 284 - 554
Target Start/End: Complemental strand, 26063809 - 26063550
Alignment:
Q  284 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgtt 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  26063809 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgcc 26063710  T
Q  384 atgctagaagcaataactacattgcagtagcaccctctttaaacaaacatgtattattccattatagtcgaaaagaccgaccatagaaacttagataagg 483  Q
    ||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26063709 atgctagaagcaataactacattgcagtagca------------taacatgtattattccattatagtcgaaaagaccgaccatagaaacttagataagg 26063622  T
Q  484 aac-nnnnnnnnngtacaaaacactgacctacacaatagcagtacaagaaacaataattgtaaatcaaacca 554  Q
    |||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26063621 aacaaaaaaaaaagtacaaaacactgacctacacaatagcagtacaagaaacaataattgtaaatcaaacca 26063550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 284 - 554
Target Start/End: Complemental strand, 26083778 - 26083519
Alignment:
Q  284 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgtt 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  26083778 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgcc 26083679  T
Q  384 atgctagaagcaataactacattgcagtagcaccctctttaaacaaacatgtattattccattatagtcgaaaagaccgaccatagaaacttagataagg 483  Q
    ||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26083678 atgctagaagcaataactacattgcagtagca------------taacatgtattattccattatagtcgaaaagaccgaccatagaaacttagataagg 26083591  T
Q  484 aac-nnnnnnnnngtacaaaacactgacctacacaatagcagtacaagaaacaataattgtaaatcaaacca 554  Q
    |||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26083590 aacaaaaaaaaaagtacaaaacactgacctacacaatagcagtacaagaaacaataattgtaaatcaaacca 26083519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 284 - 561
Target Start/End: Complemental strand, 25515516 - 25515228
Alignment:
Q  284 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaa-gaccaaatcagcctagtaaatgt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||     
T  25515516 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtcccttgatgagttcgaaaaggaccaaatcagcctagtaaatgc 25515417  T
Q  383 tatgctagaagcaataactacattgcagtagcaccctctttaaacaaacatgtattattccattata-gtcgaaaagaccgaccatagaaacttagataa 481  Q
     | ||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  25515416 cacgctagaagcaataactacattgcagtatcatcctctttatacaaacatgtattattccattatacgtcgaaaagaccgagcatagaaacttagataa 25515317  T
Q  482 gga---------acnnnnnnnnngtacaaaacactgacctacacaatagcagtacaagaaacaataattgtaaatcaaaccagctaact 561  Q
    |||         ||         || || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25515316 ggaaccaaaaatacaagaaaaaagtccataaccctgacctacacaatagcaatacaagaaacaataattgtaaatcaaaccagctaact 25515228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 93 - 285
Target Start/End: Complemental strand, 25515737 - 25515545
Alignment:
Q  93 tgatggagagaaaaattccaatctttcttcatgtaagctctgataatctccaacatattggcataatggtgaaagtgatgagtgttcattgatcctaact 192  Q
    ||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||||  |||||    
T  25515737 tgatggagagaaaaattccaatctttcatcttgtaagctctaataatcaccaacatattggcataatggtgaaagtgatgagtgctcaatgatattaact 25515638  T
Q  193 gcaccacgtgaagagaatcataatagcatataaacttccgggctttccaccacaacttgagaccaacaaggagagcctgaatctctgcatgaa 285  Q
    || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25515637 gctccacatgaagagaatcataatagaatataaacttccgggctttccaccacaacttcagaccaacaaggagagcctgaatctctgcatgaa 25515545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 49 - 286
Target Start/End: Complemental strand, 25455219 - 25454973
Alignment:
Q  49 atttcgctagaatatc-tgctcaagcattgccctcaggaaaagtctgatggagagaaaaattccaatctttcttcatgtaagctctgataatctccaaca 147  Q
    |||| ||||||||||| ||| |||| ||| |||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25455219 attttgctagaatatcatgcccaagaatttccctcatgaagagtctgatggagagaaaaatttcaatctttcttcatgtaagctctgataatctccaaca 25455120  T
Q  148 ta-ttggcataatggtgaaagtgatgagtgttcattgatcctaactgcaccacgtgaagagaatcataatagcatataaacttc-------cgggctttc 239  Q
    || |||||||||||||||||| ||||| ||  ||||||| ||||||| ||||||| |||| ||||| |||||||||||| ||||       |  |||| |    
T  25455119 tatttggcataatggtgaaagagatgaatgcccattgatactaactgaaccacgtcaagaaaatcagaatagcatataaccttctgaaaagccagcttgc 25455020  T
Q  240 caccacaacttgagaccaacaaggagagcctgaatctctgcatgaaa 286  Q
    || |||||||||||||||||||||| ||| |||||||||| ||||||    
T  25455019 cagcacaacttgagaccaacaaggaaagcatgaatctctgtatgaaa 25454973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 284 - 486
Target Start/End: Complemental strand, 25454946 - 25454743
Alignment:
Q  284 aaatccaaattgaaaagctttgtcataattccgatcaagtcctccaaatcctgcagtccttggatgagttcgaaaagaccaaatcagcctagtaaatgtt 383  Q
    ||||||||||||||| |||  |||||||||||| |||||||||||||||| |||||||| ||||| |||| |||||||||||||||| || |||||||      
T  25454946 aaatccaaattgaaatgctccgtcataattccgttcaagtcctccaaatcttgcagtccctggattagttagaaaagaccaaatcagtcttgtaaatgcc 25454847  T
Q  384 atgctagaagcaataactacattgcagtagcaccctctttaaacaaacatgtattattccattata-gtcgaaaagaccgaccatagaaacttagataag 482  Q
    | |||||||| |||||| ||| ||||||| || ||||||||||||| ||| |||||| ||||  || || | |||||||| ||||||| | ||||||||     
T  25454846 acgctagaagtaataacgacactgcagtatcatcctctttaaacaagcatctattataccatcgtatgtagcaaagaccggccatagagatttagataaa 25454747  T
Q  483 gaac 486  Q
    ||||    
T  25454746 gaac 25454743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 25318743 - 25318711
Alignment:
Q  253 gaccaacaaggagagcctgaatctctgcatgaa 285  Q
    |||||||||||||||||||||||||||||||||    
T  25318743 gaccaacaaggagagcctgaatctctgcatgaa 25318711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 26148436 - 26148404
Alignment:
Q  253 gaccaacaaggagagcctgaatctctgcatgaa 285  Q
    |||||||||||||||||||||||||||||||||    
T  26148436 gaccaacaaggagagcctgaatctctgcatgaa 26148404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 25455633 - 25455664
Alignment:
Q  6 agctcgtagaccgtaaccaaggtatctataca 37  Q
    ||||||||||||||||||||||||||||||||    
T  25455633 agctcgtagaccgtaaccaaggtatctataca 25455664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 33200959 - 33200899
Alignment:
Q  104 aaaattccaatctttcttcatgtaagctctgataatctccaacatattggcataatggtga 164  Q
    |||||| ||||| |||||||||||| || |||||||||||| |||||| ||||||| ||||    
T  33200959 aaaatttcaatccttcttcatgtaatctttgataatctccatcatattagcataattgtga 33200899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 3392212 - 3392153
Alignment:
Q  105 aaattccaatctttcttcatgtaagctctgataatctccaacatattggcataatggtga 164  Q
    ||||| |||||||| |||||| || |||| ||||||||||||||||| ||||||| ||||    
T  3392212 aaatttcaatctttattcatgaaatctctaataatctccaacatattagcataatagtga 3392153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 17848205 - 17848285
Alignment:
Q  70 aagcattgccctcaggaaaagtctgatggagagaaaaattccaatctttcttcatgtaagctctgataatctccaacatat 150  Q
    ||||||||||||||  || ||| | |||||||||| || |||||| |||||||||| || || | ||||||| ||||||||    
T  17848205 aagcattgccctcactaagagtattatggagagaataaatccaatatttcttcatgcaatctttaataatcttcaacatat 17848285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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