View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16598_low_5 (Length: 546)
Name: NF16598_low_5
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16598_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Complemental strand, 1883427 - 1882895
Alignment:
| Q |
18 |
ggatggataaaactagattcacacagaatgtactgttctaaaaggaaagtagctttaactaagaatcaaaaccaaaaatatataaaattgagtgaaaata |
117 |
Q |
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| T |
1883427 |
ggatggataaaactagattcacacagaatgtactgttctaaaaggaaagtagctttaactaagaatcaaaaccaaaaatatataaaattgagtgaaaata |
1883328 |
T |
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| Q |
118 |
ggaagaaacacatggaatgg-----ttggaagtattttaagttatcttaaagaattgtcggtttcttgttaaaacatagaacaaaaaattgttggaggtg |
212 |
Q |
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| T |
1883327 |
ggaagaaacacatggaatggaatggttggaagtattttaagttatcttaaagaattgtcggtttcttgttaaaacatagaacaaaaaattgttggaggtg |
1883228 |
T |
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| Q |
213 |
ttacaggctgtgatgaaatgggcatatagtagtaatgctaatgagttaaatagtgaatgaagttatgagtatattagatttggattggatgatagaaatg |
312 |
Q |
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| T |
1883227 |
ttacaggctgtgatgaaatgggcatatagtagtaatgctaatgagttaaacagtgaatgaagttatgagtatattagatttggattggatgatagaaatg |
1883128 |
T |
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| Q |
313 |
tatgtataactgtataagtaaggacaatgccagtttcagtgtctttatgcctcaccatacatgtcttttcattttcagctcacnnnnnnnnnattctttt |
412 |
Q |
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| T |
1883127 |
tatgtataactgtataagtaaggacaatgccagtttcagtgtctttatgcctcaccatacatgtcttttcattttcagctcac-ttttttttattctttt |
1883029 |
T |
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| Q |
413 |
agttcgttattcaatattgttatgtcacaaaaacattcctcttatgattaaaaatatgccacttggccttatataggtttagtttattactaattaataa |
512 |
Q |
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| T |
1883028 |
agttggttattcaatattgttatgtcacaaaaacattcctcttatgattaaaaatatgccacttggccttatataggtttagttcattactaattaataa |
1882929 |
T |
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| Q |
513 |
tgagagtgaaagtatggagaaactctaatatttt |
546 |
Q |
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| T |
1882928 |
tgagagtgaaagtatggacaacctctaatatttt |
1882895 |
T |
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