View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16598_low_6 (Length: 538)

Name: NF16598_low_6
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16598_low_6
NF16598_low_6
[»] chr2 (4 HSPs)
chr2 (221-520)||(38971032-38971331)
chr2 (1-190)||(38971362-38971551)
chr2 (1-68)||(41791400-41791467)
chr2 (441-487)||(16080468-16080514)
[»] chr3 (2 HSPs)
chr3 (1-161)||(47762296-47762469)
chr3 (429-498)||(51361278-51361347)
[»] chr7 (4 HSPs)
chr7 (429-520)||(6232191-6232282)
chr7 (440-519)||(44346464-44346543)
chr7 (441-517)||(48888167-48888243)
chr7 (429-519)||(19883496-19883586)
[»] chr6 (1 HSPs)
chr6 (429-520)||(380694-380785)
[»] chr8 (4 HSPs)
chr8 (429-520)||(42202673-42202764)
chr8 (445-487)||(3578043-3578085)
chr8 (438-514)||(44684461-44684537)
chr8 (444-499)||(25967870-25967925)
[»] chr4 (5 HSPs)
chr4 (429-515)||(18848043-18848129)
chr4 (429-520)||(55329134-55329225)
chr4 (447-517)||(55353548-55353618)
chr4 (342-433)||(15005935-15006027)
chr4 (438-514)||(42111046-42111122)
[»] chr5 (3 HSPs)
chr5 (429-520)||(3678263-3678354)
chr5 (441-519)||(42629039-42629117)
chr5 (429-500)||(2756330-2756401)
[»] chr1 (3 HSPs)
chr1 (368-426)||(52590064-52590122)
chr1 (431-479)||(13155032-13155080)
chr1 (347-419)||(50361344-50361417)
[»] scaffold0691 (1 HSPs)
scaffold0691 (438-514)||(1168-1244)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 221 - 520
Target Start/End: Complemental strand, 38971331 - 38971032
Alignment:
Q  221 ctaatatcgtatgatggtggttgatacnnnnnnnnnnnctttacaattgtataatgtttgtctgtttcatcgatatattaattggaaatggaattcatat 320  Q
    |||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38971331 ctaatatcgtatgatggtggttgatactttttttttttctttacaattgtataatgtttgtctgtttcatcgatatattaattggaaatggaattcatat 38971232  T
Q  321 gaacactcnnnnnnnnnnncctgtgatttttgtgagctgttcttgagcttatggacttaatctatttgcatttctttaaatgtttttatattctatttta 420  Q
    ||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38971231 gaacactctttttttttttcctgtgatttttgtgagctgttcttgagcttatggacttaatctatttgcatttctttaaatgtttttatattctatttta 38971132  T
Q  421 attttgcatatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaat 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38971131 attttgcatatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaat 38971032  T

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Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 38971551 - 38971362
Alignment:
Q  1 taggggatcattaagggatagattgtttacacagtcacacacaacttgagtgtattgcaaatccaaaataagattttatatagttccatatcaatatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38971551 taggggatcattaagggatagattgtttacacagtcacacacaacttgagtgtattgcaaatccaaaataagattttatatagttccatatcaatatatg 38971452  T
Q  101 agaacaaataaggtcagaataaattactactaagttataaacataagaatatatttagacacaaatctcatatacacacacatatgcagt 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38971451 agaacaaataaggtcagaataaattactactaagttataaacataagaatatatttagacacaaatctcatatacacacacatatgcagt 38971362  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 41791467 - 41791400
Alignment:
Q  1 taggggatcattaagggatagattgtttacacagtcacacacaacttgagtgtattgcaaatccaaaa 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41791467 taggggatcattaagggatagattgtttacacagtcacacacaacttgagtgtattgcaaatccaaaa 41791400  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 487
Target Start/End: Complemental strand, 16080514 - 16080468
Alignment:
Q  441 cattctttggggttccaacaccactcgtaatagaggcaatgaggact 487  Q
    ||||| |||||||||||||||||||| ||| |||||||| |||||||    
T  16080514 cattccttggggttccaacaccactcataaaagaggcaaggaggact 16080468  T

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Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 47762296 - 47762469
Alignment:
Q  1 taggggatcattaagggatagattgtttacacagtcacacacaacttgagtgtattgcaaatccaaaataagattttatat----------agttccata 90  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||          | |||||||    
T  47762296 tagggggtcattaagggatagattgttaacactgtcacacacaacttgagtgtattgcaaatccaaaataagattttatatatatagttccatttccata 47762395  T
Q  91 tcaatatatgagaacaaataag---gtcagaataaattactactaagttataaacataagaatatatttagaca 161  Q
    ||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47762396 tcaatatatgagaacaaataagaaagtcagaataaactactactaagttataaacataagaatatatttagaca 47762469  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 51361347 - 51361278
Alignment:
Q  429 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctag 498  Q
    |||||||||| |||||| |||||||||||||||||||| |||||||||||  ||| |||||| |||||||    
T  51361347 tatctcaataggcattccttggggttccaacaccactcataatagaggcagggagaacttttgagtctag 51361278  T

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Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 520
Target Start/End: Complemental strand, 6232282 - 6232191
Alignment:
Q  429 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaat 520  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||  ||||||||||||| |||||||||||||||||    
T  6232282 tatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagtctagaattagcccaattccacgaaat 6232191  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 440 - 519
Target Start/End: Complemental strand, 44346543 - 44346464
Alignment:
Q  440 gcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaa 519  Q
    |||||||||||||||||| ||||||| |||| |||||||| |||||||||||||||||||||| |||||||| |||||||    
T  44346543 gcattctttggggttccagcaccacttgtaaaagaggcaaggaggacttttaagtctagaattcgcccaattacacgaaa 44346464  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 441 - 517
Target Start/End: Complemental strand, 48888243 - 48888167
Alignment:
Q  441 cattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacga 517  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||  |||||||||||||    
T  48888243 cattccttggggttccaacaccactcgtaatagaggcaaggaggactctttagtctagaattcacccaattccacga 48888167  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 429 - 519
Target Start/End: Original strand, 19883496 - 19883586
Alignment:
Q  429 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaa 519  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||  ||||||| || ||||||||    ||||||||||||||||    
T  19883496 tatctcaataaacattccttggggttccaacaccactcgtaatagaggcacggaggactctttagtctagacaccgcccaattccacgaaa 19883586  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 520
Target Start/End: Original strand, 380694 - 380785
Alignment:
Q  429 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaat 520  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||  ||||||||||||| |||||||||||||||||    
T  380694 tatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagtctagaattagcccaattccacgaaat 380785  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 429 - 520
Target Start/End: Complemental strand, 42202764 - 42202673
Alignment:
Q  429 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaat 520  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||| ||||    
T  42202764 tatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagaattcacccaattccacaaaat 42202673  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 487
Target Start/End: Original strand, 3578043 - 3578085
Alignment:
Q  445 ctttggggttccaacaccactcgtaatagaggcaatgaggact 487  Q
    |||||||||||||||||||||||||| |||||||| |||||||    
T  3578043 ctttggggttccaacaccactcgtaaaagaggcaaagaggact 3578085  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 514
Target Start/End: Complemental strand, 44684537 - 44684461
Alignment:
Q  438 aagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattcca 514  Q
    |||||||| |||||||||||||||||||| ||| |||||||  ||||||| |||||| | | | | |||||||||||    
T  44684537 aagcattccttggggttccaacaccactcataaaagaggcagggaggactcttaagttttgtaatcgcccaattcca 44684461  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 25967870 - 25967925
Alignment:
Q  444 tctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctaga 499  Q
    |||||||||||||| | |||||||||| |||||||| |||||||||| | ||||||    
T  25967870 tctttggggttccagctccactcgtaaaagaggcaaggaggactttttaatctaga 25967925  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 429 - 515
Target Start/End: Complemental strand, 18848129 - 18848043
Alignment:
Q  429 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccac 515  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||| |   ||||||||||||    
T  18848129 tatctcaataggcattccttggggttccaacaccactcgtaatagaggcagggaggacttttaagtctagtaaccgcccaattccac 18848043  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 429 - 520
Target Start/End: Complemental strand, 55329225 - 55329134
Alignment:
Q  429 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaat 520  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| ||| |||||||| ||||| |  ||||| ||||||||    
T  55329225 tatctcaataagcattccttgaggttccaacaccactcgtaatagaggcaaggagaactcttaagtcttgaattcgttcaatttcacgaaat 55329134  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 447 - 517
Target Start/End: Complemental strand, 55353618 - 55353548
Alignment:
Q  447 ttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacga 517  Q
    ||||||||||| ||||| |||||| |||||||| |||||||||||||||| ||||| ||||||||||||||    
T  55353618 ttggggttccagcaccaatcgtaaaagaggcaaggaggacttttaagtctggaattcgcccaattccacga 55353548  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 433
Target Start/End: Original strand, 15005935 - 15006027
Alignment:
Q  342 tgtgatttttgtgagctgttcttgagcttatggacttaatctatttgcatttctttaaatgtttttatattc-tattttaattttgcatatct 433  Q
    |||||||||||||||||||| || ||| | || |||||||||||| | |||||||||||||  |||||||||  |||||| ||||||| ||||    
T  15005935 tgtgatttttgtgagctgttatttagcgtctgaacttaatctattaggatttctttaaatgcatttatattcaaattttatttttgcaaatct 15006027  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 514
Target Start/End: Original strand, 42111046 - 42111122
Alignment:
Q  438 aagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattcca 514  Q
    |||||||| ||||||||||||||||||||  || ||||||| |||||||| |||||||| | | | |||||||||||    
T  42111046 aagcattccttggggttccaacaccactcaaaaaagaggcagtgaggactcttaagtcttgtaatcgcccaattcca 42111122  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 429 - 520
Target Start/End: Original strand, 3678263 - 3678354
Alignment:
Q  429 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaat 520  Q
    ||||| |||||||||||  |||||||||||||| ||| ||||||||||||| ||||||| |||||||||| | |  ||||||||||||||||    
T  3678263 tatcttaataagcattcgatggggttccaacacaacttgtaatagaggcaaggaggactcttaagtctagtaatcacccaattccacgaaat 3678354  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 519
Target Start/End: Original strand, 42629039 - 42629117
Alignment:
Q  441 cattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaa 519  Q
    ||||| |||||||||| ||||||||| |||||||||||  |||||||||| ||||||| |   ||||||||||||||||    
T  42629039 cattccttggggttccgacaccactcataatagaggcagggaggacttttcagtctagtaaccgcccaattccacgaaa 42629117  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 500
Target Start/End: Original strand, 2756330 - 2756401
Alignment:
Q  429 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaa 500  Q
    ||||||| ||| ||||  |||||||||||||||||||||||||| |||||  |||| || || |||||||||    
T  2756330 tatctcagtaaacatttcttggggttccaacaccactcgtaataaaggcacggaggcctctttagtctagaa 2756401  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 52590064 - 52590122
Alignment:
Q  368 cttatggacttaatctatttgcatttctttaaatgtttttatattctattttaattttg 426  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| ||| ||||||    
T  52590064 cttatggactttatgtatttgcatttctttaaatgtttttatattctacttttattttg 52590122  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 479
Target Start/End: Complemental strand, 13155080 - 13155032
Alignment:
Q  431 tctcaataagcattctttggggttccaacaccactcgtaatagaggcaa 479  Q
    ||||| ||| |||||||| |||||| |||||||||||||||||||||||    
T  13155080 tctcagtaaacattctttagggttcaaacaccactcgtaatagaggcaa 13155032  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 419
Target Start/End: Original strand, 50361344 - 50361417
Alignment:
Q  347 tttttgtgagctgttcttgagcttatggactt-aatctatttgcatttctttaaatgtttttatattctatttt 419  Q
    |||||||||  ||||| |||||||||  |||| ||||||| |||||||||||| |||||||| |||| ||||||    
T  50361344 tttttgtgaattgttcctgagcttatcaactttaatctatatgcatttctttagatgtttttttattttatttt 50361417  T

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Target: scaffold0691 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 514
Target Start/End: Complemental strand, 1244 - 1168
Alignment:
Q  438 aagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattcca 514  Q
    |||||||| ||||| |||||||||||||| ||| |||||||  ||||||| |||||||| | | | |||||||||||    
T  1244 aagcattccttgggcttccaacaccactcataaaagaggcagggaggactcttaagtcttgtaatcgcccaattcca 1168  T

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