View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16598_low_7 (Length: 506)
Name: NF16598_low_7
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16598_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 38344794 - 38345270
Alignment:
| Q |
18 |
ctatcaggctatccttattggtaaggactttggtgccatcccagcatatcttgtagctgctgtccatccagaaaaagtagcttctgtcataactttaggc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38344794 |
ctatcaggctatccttattggtaaggactttggtgccatcccagcatatcttgtagctgctgtccatccagaaaaagtagcttctgtcataactttaggc |
38344893 |
T |
|
| Q |
118 |
gttcctttcatacttcccggtccttctgctgtccaaaaccatcttcttccaaaaggcttctacatcactaggtggcaggtgcaaattctcttccataatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38344894 |
gttcctttcatacttcccggtccttctgctgtccaaaaccatcttcttccaaaaggcttctacatcactaggtggcaggtgcaaattctcttccataatc |
38344993 |
T |
|
| Q |
218 |
atatttatcttctatatacttcctctagacttaaatataaacnnnnnnngtatatgtatctgattcgcatttgaaccggatggacatattcaaggatgta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38344994 |
atatttatcttctatatacttcctctagacttaaatataaacaaaaaaagtatatgtatctgattcgcatttgaaccggatggacatattcaaggatgta |
38345093 |
T |
|
| Q |
318 |
cnnnnnnngcttgtatttaagttcggagtagtttatgaaaatgataaactattgagtaaattaattcaggagcctgggagagcagaagcagattttggcc |
417 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
38345094 |
ctttttttgcttgtatttaagttcggagtagtttatgaaaatgataaactattgagtaaattaattcaggagcctggtagagcagaaacagattttggcc |
38345193 |
T |
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| Q |
418 |
gatttgatgttaagtcagtaataaggaacatatatacactcttttctaaaagtgaggtgccggtagcaggtgatgat |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38345194 |
gatttgatgttaagtcagtaataaggaacatatatacactcttttctaaaagtgaggtgccggtagcaggtgatgat |
38345270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 38350123 - 38350323
Alignment:
| Q |
19 |
tatcaggctatccttattggtaaggactttggtgccatcccagcatatcttgtagctgctgtccatccagaaaaagtagcttctgtcataactttaggcg |
118 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||| |||| |||||||| |||||||| ||||||||||||| |||||| |||||||||||||| |
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| T |
38350123 |
tatcaggctttccttattggtaaggactctggtgccattgtagcaaatcttgtacctgctgtctatccagaaaaagtggcttctctcataactttaggca |
38350222 |
T |
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| Q |
119 |
ttcctttcatacttcccggtccttctgctgtccaaaaccatcttcttccaaaaggcttctacatcactaggtggcaggtgcaaattctcttccataatca |
218 |
Q |
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|||||||||| ||| ||||||||||| |||| ||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||| ||||||||| |
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| T |
38350223 |
ttcctttcatgaatcctggtccttctgcaatccagaaccatcttctcccaaaaggtttctacattactaggtggcaggtgcacattctctcccataatca |
38350322 |
T |
|
| Q |
219 |
t |
219 |
Q |
| |
|
| |
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| T |
38350323 |
t |
38350323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 336 - 494
Target Start/End: Original strand, 38350426 - 38350584
Alignment:
| Q |
336 |
aagttcggagtagtttatgaaaatgataaactattgagtaaattaattcaggagcctgggagagcagaagcagattttggccgatttgatgttaagtcag |
435 |
Q |
| |
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||||| |||||||||||| | ||| || |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || |||| |
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| T |
38350426 |
aagtttggagtagtttataacaataatgaactgttgagtaaactaattcaggagcctgggagagcagaagcagatttcggccgctttgatgtcaaatcag |
38350525 |
T |
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| Q |
436 |
taataaggaacatatatacactcttttctaaaagtgaggtgccggtagcaggtgatgat |
494 |
Q |
| |
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| ||||||||||| |||| |||||||||||||| ||||||||| |||||| |||||||| |
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| T |
38350526 |
ttataaggaacatctatatactcttttctaaaactgaggtgccagtagcaagtgatgat |
38350584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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