View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16598_low_8 (Length: 471)
Name: NF16598_low_8
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16598_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 109 - 333
Target Start/End: Original strand, 48153361 - 48153600
Alignment:
| Q |
109 |
tggatttgacatctttgttgcttaactgcttaaccccagggtccggacaacaataaaaggaaaaggaaataaata----tttgatggccataatggtgat |
204 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48153361 |
tggatttgacatctttgttgcctaactggttaaccccagggtccggacaacaataaaaggaaaaggaaataaatacttatttgatggccataatggtgat |
48153460 |
T |
|
| Q |
205 |
cgtactggccccacaaattcaagtccaaacacccatagcagtatatggctatatgccagatgcctattattct-----------tgaattaaaaagtaag |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| |
|
|
| T |
48153461 |
cgtactggacccacaaattcaagtccaaacacccatagcagtatatggctatatgccagatgcctattcttgttcaaacaaaaatgaattaaaaagtaag |
48153560 |
T |
|
| Q |
294 |
aagttggaaaagaacaatagatagcaaaattcatagcagt |
333 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48153561 |
aaggtggaaaagaacaatagatagcaaaatccatagcagt |
48153600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 332 - 408
Target Start/End: Original strand, 48153624 - 48153693
Alignment:
| Q |
332 |
gtccgatttgtt-gatacatgttgaaaatgagagcaaatgtgcaaatgaaaattattccttttgattgattaaacaag |
408 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48153624 |
gtccgatttgtttgatacatgttgaaaatgagagcaa--------atgaaaattattccttttgattgattaaacaag |
48153693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 468
Target Start/End: Original strand, 48153693 - 48153737
Alignment:
| Q |
424 |
ggtagaattttccaataatagtacttagctgtttcatctcactcg |
468 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
48153693 |
ggtagaattttccaataatagtacttggctgtttcaattcactcg |
48153737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University