View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16598_low_9 (Length: 462)
Name: NF16598_low_9
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16598_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 166 - 445
Target Start/End: Complemental strand, 17688013 - 17687737
Alignment:
| Q |
166 |
tgattcgaatcaatacctcaaaaaataaagttctgcgtaataatattttgtaaaattaaaccaaactttatttgtagctatctaataaatattttcaaaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17688013 |
tgattcgaatcaatacctcaaaaaataaagttctgcgtaataatattttgtaaaattaaaccaaactttatttgtagctatctaataaatattttcaaaa |
17687914 |
T |
|
| Q |
266 |
cagagtgacacagtggatttgagagttttagatatcattagtgtgctttacaagctaggctaagacaacacaacaaaagcaatatggattaactatccaa |
365 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17687913 |
cagcgtgacacagtggatttgagagttttagatatcattagtgtgctttacaagctaggctaagacaacacaacaaaaacaatatggattaactatccaa |
17687814 |
T |
|
| Q |
366 |
actaggcataatcaccaaacatcatcaaaatcaaatctagaggatccaggtagtaaccacaaacaaataggcatcgttat |
445 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17687813 |
actaggc---atcaccaaacatcatcaaaatcaaacctagaggatccaggtagtaaccacaaacaaatgggcatcgttat |
17687737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 17688199 - 17688032
Alignment:
| Q |
11 |
gatgaagattgattttattgccatgaacactgattcgattcataggttttcagttaaaggttgatatgaatcagcaagattttgattcgaatcatttttc |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17688199 |
gatgaagattgattttatagccatgaacattgattcgattcataggttttcagttaaaggttgatatgaatcagcaagattttgattcgaatcatttttc |
17688100 |
T |
|
| Q |
111 |
tttttaagcagagtttcgaatcaaatacttgaaaagggaaacccgtaggtcataatgattcgaatcaa |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17688099 |
tttttaagcagagtttcgaatcaaatacttgaaaagggaaacccataggtcataatgattcgaatcaa |
17688032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 166 - 299
Target Start/End: Complemental strand, 30914498 - 30914363
Alignment:
| Q |
166 |
tgattcgaatcaatacctcaaaaaataaagttctgcgtaataatattttgtaaaattaaaccaaactttatttgtagctatctaata-aatattttcaaa |
264 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||| ||| | | |||| ||||||||| || ||||||| |||||| |||||||| |||| || |||||||| |
|
|
| T |
30914498 |
tgattcaaatcaataccttaaaaaatcaagttttgcatgaaaatactttgtaaaactataccaaac-ttatttctagctatccaatacaagattttcaag |
30914400 |
T |
|
| Q |
265 |
aca--gagtgacacagtggatttgagagttttagata |
299 |
Q |
| |
|
||| |||||||||| |||||||||||| |||||||| |
|
|
| T |
30914399 |
acatggagtgacacaatggatttgagagatttagata |
30914363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 26731080 - 26731027
Alignment:
| Q |
125 |
ttcgaatcaaatacttgaaaagggaaacccgtaggtcataatgattcgaatcaa |
178 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| ||||||| ||||||| |
|
|
| T |
26731080 |
ttcgaatcaaatacttgaaaagaaaaacccgaaggtcaaaatgatttgaatcaa |
26731027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University