View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16599_high_4 (Length: 285)
Name: NF16599_high_4
Description: NF16599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16599_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 2366448 - 2366712
Alignment:
| Q |
9 |
gagatgaagcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacaatattttggtc---ctacgaatgtgatcaacgagg |
105 |
Q |
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| T |
2366448 |
gagatgaagcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacaatattttggtcatcctacgaatgtgatcaacgagg |
2366547 |
T |
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| Q |
106 |
aagaagggcaaagatgtgtaaaagctttaaaaaagttgatgcatttgttaggggtgttcacaataggagatgccattcctttactaaaatggtttgattt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2366548 |
aagaagggcaaagatgtgtaaaagctttaaaaaagttgatgcatttgttaggggtgttcacaataggagatgccattcctttactaaaatggtttgattt |
2366647 |
T |
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| Q |
206 |
tggtggccatgtgaaggccatgaaagcaacttctaaagaattggacaagattttaggtgatttgt |
270 |
Q |
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| T |
2366648 |
tggtggccatgtgaaggccatgaaagcaacttctaaagaattggacaagattttaggtgatttgt |
2366712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 2361850 - 2362105
Alignment:
| Q |
15 |
aagcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacaatattttggtcctacgaatgtgatcaacgaggaagaagggc |
114 |
Q |
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| T |
2361850 |
aagcaatggtttactcaattaagtttcaacattgttcttccagtgctggttgggaaacgatattttggtgctacgaatgtggcgaacgaggaagaagcgc |
2361949 |
T |
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| Q |
115 |
aaagatgtgtaaaagctttaaaaaagttgatgcatttgttaggggtgttcacaataggagatgccattcctttactaaaatggtttgattttggtggcca |
214 |
Q |
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| T |
2361950 |
aaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgattttggtggcca |
2362049 |
T |
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| Q |
215 |
tgtgaaggccatgaaagcaacttctaaagaattggacaagattttaggtgatttgt |
270 |
Q |
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| T |
2362050 |
tgtgaaggccatgaaagcaacttctaaagaattggacaagattttaggtgagttgt |
2362105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 2356317 - 2356406
Alignment:
| Q |
171 |
ggagatgccattcctttactaaaatggtttgattttggtggccatgtgaaggccatgaaagcaacttctaaagaattggacaagatttta |
260 |
Q |
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| T |
2356317 |
ggagatgctattccttgtttagaacggtttgattttggtggccatgtgaaagctatgaaaaaaacttctaaggaattggacatgatttta |
2356406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 265
Target Start/End: Original strand, 2349606 - 2349766
Alignment:
| Q |
105 |
gaagaagggcaaagatgtgtaaaagctttaaaaaagttgatgcatttgttaggggtgttcacaataggagatgccattcctttactaaaatggtttgatt |
204 |
Q |
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||||||| |||||| |||| |||||||| || || | |||| |||||| ||||| |||| | ||||||| ||||||| ||||||||||||||| |
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| T |
2349606 |
gaagaagctcaaagaagtgtgaaagctttgaaggagattatgcgtttgttcggggtaatcacggtgggagatgttattccttgtttaaaatggtttgatt |
2349705 |
T |
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| Q |
205 |
ttggtggccatgtgaaggccatgaaagcaacttctaaagaattggacaagattttaggtga |
265 |
Q |
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| T |
2349706 |
ttggtggtcatatgaaggccatggatgaaacttctacggaaatggacgaaattttaggtga |
2349766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 2338656 - 2338717
Alignment:
| Q |
198 |
tttgattttggtggccatgtgaaggccatgaaagcaacttctaaagaattggacaagatttt |
259 |
Q |
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| T |
2338656 |
tttgattttggtggttatgtgaagaccatgaaagaaacttccaaggagttggacaagatttt |
2338717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 2306337 - 2306394
Alignment:
| Q |
200 |
tgattttggtggccatgtgaaggccatgaaagcaacttctaaagaattggacaagatt |
257 |
Q |
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| T |
2306337 |
tgattttggtggttatgtgaaggccatgaaagaaacttccaaggagttggataagatt |
2306394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 41341755 - 41342009
Alignment:
| Q |
13 |
tgaagcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacaatattttggtcctacgaatgtgatcaacgaggaagaagg |
112 |
Q |
| |
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|||| ||||| || |||||||||||| || ||||||||||||||| |||||||||| | ||||||||| ||||||||||| | || ||||||||| |
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| T |
41341755 |
tgaaacaatgttttactcaattgagtaaaaacattgttcttccaatgttggttgggaagcgatattttggagctacgaatgtggttgacaaggaagaaga |
41341854 |
T |
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| Q |
113 |
gcaaagatgtgtaaaagctttaaaaaagttgatgcatttgttaggggtgttcacaataggagatgccattcc-tttactaaaatggtttgattttggtgg |
211 |
Q |
| |
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|||| |||| | |||||||| || || || | | |||||||||||||||||| | || | ||| |||| ||| ||||||||||||||||||||||| |
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| T |
41341855 |
acaaaaatgtatgaaagctttggaagagatgttacgtttgttaggggtgttcacggtgggtggtgctcttcccttttctaaaatggtttgattttggtgg |
41341954 |
T |
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| Q |
212 |
ccatgtgaaggccatgaaagcaacttctaaagaattggacaagattttaggtgat |
266 |
Q |
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| T |
41341955 |
ccatgtgaaggcaatgaaatttttttctaaagaattggacaagattttaggtgat |
41342009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 4303615 - 4303870
Alignment:
| Q |
15 |
aagcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacaatattttggtcctacgaatgtgatcaacgaggaagaagggc |
114 |
Q |
| |
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||||||||||| |||||||||| | | | | ||||||||| || ||||||| || | |||||| ||| |||| ||||| ||| || ||||||||| |
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| T |
4303615 |
aagcaatggtttactcaattgaatatagacttggttcttccattgttggttggaaagcgatatttcggttctacaaatgttatcgacaaggaagaagtag |
4303714 |
T |
|
| Q |
115 |
aaagatgtgtaaaagctttaaaaaagttgatgcatttgttaggggtgttcacaataggagatgccattcctttactaaaatggtttgattttggtggcca |
214 |
Q |
| |
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||| ||||||||||||| ||||| || || ||| |||| | |||||||||||| | |||||||| ||||||| ||||||||||||||||||| ||||| |
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| T |
4303715 |
aaatatgtgtaaaagctataaaagagatgctgcgtttgatgggggtgttcacagtgggagatgctcttccttttttaaaatggtttgattttgggggcca |
4303814 |
T |
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| Q |
215 |
tgtgaaggccatgaaagcaacttctaaagaattggacaagattttaggtgatttgt |
270 |
Q |
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| T |
4303815 |
tgtgaaggccatgaaaaaagctaccaaagagatggacaagattataggtgatttgt |
4303870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 5805644 - 5805571
Alignment:
| Q |
192 |
aaatggtttgattttggtggccatgtgaaggccatgaaagcaacttctaaagaattggacaagattttaggtga |
265 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||| | ||||||||| |||||||| | ||||||||||| |
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| T |
5805644 |
aaatggtttgattttggtggtcatgtaaaggccatgaatgaaacttctaaggaattggatgaaattttaggtga |
5805571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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