View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16599_low_1 (Length: 519)
Name: NF16599_low_1
Description: NF16599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16599_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 504
Target Start/End: Original strand, 41584135 - 41584626
Alignment:
| Q |
11 |
tatgaataggaaaatgtcaagaaagcagctagaggcaatggagtctttggataaggagatggcagaagagcagctagccgaaatgaagtctatggatagg |
110 |
Q |
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| T |
41584135 |
tatgaataggaaaatgtcaagaaagcagctagaggcaatggagtctttggataaggagatggcagaagagcagctagccgaaatggagtctatggatagg |
41584234 |
T |
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| Q |
111 |
cacttggcaaacatgaagctaaaggaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaaa |
210 |
Q |
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| T |
41584235 |
cacttggctaacatgaagctaaaggaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaaa |
41584334 |
T |
|
| Q |
211 |
aggttaggaaaagtagttaggaatcaggttaactttttatgnnnnnnnnnaatgtatgactattattgtagtcaagttagtctacgctttctctttgaag |
310 |
Q |
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| T |
41584335 |
aggttaggaaaagtagttaggagtcaggt-aattctttatgttttttttaa---tatgactattattgtagtcaagttagtctacgctttctctttgaag |
41584430 |
T |
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| Q |
311 |
tgcattgcttagacaggaaaaactaaaattttggaaaattgatctcgaagagatggacagagatataaaggctcacctgat--acacacacacaagctgt |
408 |
Q |
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| T |
41584431 |
tgcattgcttagacaggaaaaactaaaattttggaaaattgatctcgaagagatggacagagatataaaggctcacctgatacacacacacacaagctgt |
41584530 |
T |
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| Q |
409 |
attcaataaaacatatatgctttgcagcaaatgatctcagtgtccttgttctgcatatcaattttcggctttgatattttcttctgtaatgttggt |
504 |
Q |
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| T |
41584531 |
attcaataaaacatatatgctttgcagcaaatgatctcagtgtccttgttctgcatattaattttcggctttgatattttcttctgtaatgttggt |
41584626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 40179641 - 40179561
Alignment:
| Q |
142 |
atcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaaaaggttaggaaaa |
222 |
Q |
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| T |
40179641 |
atcttaatatcagggcatcattttcataggaggttaaactattaatgcaaaaataattgagtggagaaaatgtttggaaaa |
40179561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 38604236 - 38604150
Alignment:
| Q |
11 |
tatgaataggaaaatgtcaagaaagcagctagaggcaatggagtctttggataaggagatggcagaagagcagctagccgaaatgaa |
97 |
Q |
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| T |
38604236 |
tatggataggaaaatgacaatagtgcagctagaggaaatggagcctatggatagggaaatggcagaaaatcagctagctgaaatgaa |
38604150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 44461287 - 44461361
Alignment:
| Q |
135 |
gaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaa |
209 |
Q |
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| T |
44461287 |
gaaatgtatcttaatattagggcattattttgataggaagttagaatcttgatgcaaaattaattgagttgagaa |
44461361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 44468820 - 44468894
Alignment:
| Q |
135 |
gaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaa |
209 |
Q |
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| T |
44468820 |
gaaatgtatcttaatattagggcattattttgataggaagttagaatcttgatgcaaaattaattgagttgagaa |
44468894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 46360096 - 46360170
Alignment:
| Q |
135 |
gaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaa |
209 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||||||| ||||| |
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| T |
46360096 |
gaaatgtatcttaatattagggcattattttgataggaagttagaatcttgatgcaaaattaattgagttgagaa |
46360170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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