View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16599_low_2 (Length: 442)
Name: NF16599_low_2
Description: NF16599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16599_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 29091423 - 29091852
Alignment:
| Q |
1 |
tttgtttttactttgttatccttttctttctctaccatattcaccataacaaacaattgcccttatactatatggcccggcacactcgccggtgcaggca |
100 |
Q |
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| T |
29091423 |
tttgtttttactttgttatctttttctttctctaccatattcaccataacaaacaattgcccttatactatatggccaggcacactcgccggtgcaggca |
29091522 |
T |
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| Q |
101 |
cgccagcgcttccatcaactggatttcagcttgactcaagtcaagctgcaaaactaacaagtgttccagggtggtcgggtcggatatgggcgaggactgg |
200 |
Q |
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| T |
29091523 |
cgtcagcgcttccatcaactggatttcagcttgactcaggtcaagctgcgaaactaacaagtgttccagggtggtcgggtcggatatgggcgaggactgg |
29091622 |
T |
|
| Q |
201 |
ttgcacatttgatgcatccggaattggcaaatgccaaacaggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacctacttcactt |
300 |
Q |
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| T |
29091623 |
ttgcacatttgatgcatccggaattggcaaatgccaaacgggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacctacttcactt |
29091722 |
T |
|
| Q |
301 |
ttcgagattacaattggacaaggcgatcaacaagattactatgatgttagtatggttgatggatacaatctcccaatgcttgttctaccaagaggtgtat |
400 |
Q |
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| T |
29091723 |
ttcgagattacaattggacaaggtgatcaacaagattactatgatgttagtatggttgatggatacaatctcccaatgcttgttctaccaagaggtgtat |
29091822 |
T |
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| Q |
401 |
atggtaaaagtgcatgtaatgccacaggtt |
430 |
Q |
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| T |
29091823 |
atggtaaaagtgcatgtaatgccacaggtt |
29091852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 202 - 384
Target Start/End: Original strand, 29084285 - 29084467
Alignment:
| Q |
202 |
tgcacatttgatgcatccggaattggcaaatgccaaacaggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacctacttcacttt |
301 |
Q |
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|||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |
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| T |
29084285 |
tgcacatttgatgcattaggaattgacaagtgccaaacaggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacgtgatggacttt |
29084384 |
T |
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| Q |
302 |
tcgagattacaattggacaaggcgatcaacaagattactatgatgttagtatggttgatggatacaatctcccaatgcttgtt |
384 |
Q |
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| T |
29084385 |
tcgagattacaattggtcaaggtgatcaacaagattgctatgatgttagcatggttgatggatgcaatcttccaatgcttgtt |
29084467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 29084101 - 29084201
Alignment:
| Q |
1 |
tttgtttttactttgttatcctttt-ctttctctaccatattcaccataacaaacaattgcccttatactatatggcccggcacactcgccggtgcaggc |
99 |
Q |
| |
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|||||||||||||| ||||| |||| || |||||| |||||||||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||| |
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| T |
29084101 |
tttgtttttactttattatcttttttctatctctagcatattcaccgtaacaaacaatttcccttatactatattgaccggcacactcgccggtgcaggc |
29084200 |
T |
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| Q |
100 |
a |
100 |
Q |
| |
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| |
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|
| T |
29084201 |
a |
29084201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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