View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16599_low_3 (Length: 357)
Name: NF16599_low_3
Description: NF16599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16599_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 36372521 - 36372192
Alignment:
| Q |
10 |
aaatgaaggaatgtaatggagagatgatgaagttacacaaaatcttcttagcccaatttactagattaacatgtggcttgagatgcaagtaagcatgctt |
109 |
Q |
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| T |
36372521 |
aaatgaaggaatgtaatggagagatgatgaagttacacaaaatcttcttagcccaatttactagattaacatgtggcttgagatgcaagtaagcatgctt |
36372422 |
T |
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| Q |
110 |
tactgatttaagctactatcttctgtagaatgtttccaaacaaattgaccatgaaactcttctaaagtaataacaacttgtctaatttgatcaggcacta |
209 |
Q |
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| T |
36372421 |
tactgatttaagctactattttctgtagaatgtttccaaacaaattgaccatgaaactcttctaaagtaataacaacttgtctaatttgatcaggcacta |
36372322 |
T |
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| Q |
210 |
caggagccttctcagaaatattagcaagaattctcatgatgccattagaaatcattccgtgaacagttgaattaaaatctttattaacatatggaggcat |
309 |
Q |
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| T |
36372321 |
caggagccttctcagaaatattagcaagaattctcatgatgccattagaaatcattccatgaacagttgaattaaaatctttattaacatatggaggcat |
36372222 |
T |
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| Q |
310 |
attgggtagattgacaagaggggggatcct |
339 |
Q |
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| T |
36372221 |
attgggtagattgacaagaggggggatcct |
36372192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 267
Target Start/End: Complemental strand, 36367473 - 36367266
Alignment:
| Q |
49 |
aaatcttcttagcccaatttactagattaacatgtggcttgagatgcaagtaagcatgctttactgatttaagctactatcttctgtagaatgtttccaa |
148 |
Q |
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| T |
36367473 |
aaatcttcttagaccaatttactagattaacatgtagcttgagatgcaagtaaacatgctttccttat--aagctaccatct---gtagaatgtttgaaa |
36367379 |
T |
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| Q |
149 |
acaaattgaccatgaaactcttctaaagtaataacaacttgtctaatttgatcaggcactacaggagccttctcagaaatattagcaagaattctcatga |
248 |
Q |
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| T |
36367378 |
acaaattga------aactcttctaaagtaacaacaacctgtctaatttgatcagccactacaggagccgtcacagaaatataagcaggaactctcaaga |
36367285 |
T |
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| Q |
249 |
tgccattagaaatcattcc |
267 |
Q |
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| T |
36367284 |
agctattagaaatcattcc |
36367266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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