View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16599_low_5 (Length: 331)
Name: NF16599_low_5
Description: NF16599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16599_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 14369533 - 14369229
Alignment:
| Q |
11 |
cataggataatgcacacaaaatggttgtacaaacacgtacatagagttcatcacgagtaagttttatacatgttctacaaattatcaatgagctgtgaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14369533 |
cataggataatgcacacaaaatggttgtacaaacacgtacatagagttcatcacgagtaagttttatacatgttctacaa-ttatcaatgagctgtgaag |
14369435 |
T |
|
| Q |
111 |
tggttttgtgtttttcttgaagttcaaagatttttaactatgttgtgaaggtatgccacaccatttggactgacttctgaatatggtcatcctgctgaga |
210 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14369434 |
tggttttgggtttttcttgaagttcaaagatttttaactatgttgtgaaggtatgccacaccatttggactgacttctgaatatggtcatcctgcggaga |
14369335 |
T |
|
| Q |
211 |
ttttattccttggatttccgaccatgcttggtcctgctatcactggtcctcacttgattactctttggctatatacggttcttagagtcctcgagacagt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14369334 |
ttttattccttggatttccgaccatgcttggtcctgctatcactggtcctcacttgattactctttggctatatacggttcttagagtcctcgagacagt |
14369235 |
T |
|
| Q |
311 |
tgaggc |
316 |
Q |
| |
|
|||||| |
|
|
| T |
14369234 |
tgaggc |
14369229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 26465111 - 26464800
Alignment:
| Q |
11 |
cataggataatgcacacaaaatggttgtacaaacacgtacatagagttcatcacgagtaagttttatacatgttctacaaattatcaatgagctgtgaag |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
26465111 |
cataggatactgcacacaaaatggttgtacaaacatgtacatagtgttcaccacgagtaagttttatacatgttctacaa-ttatcaattagctgtgaag |
26465013 |
T |
|
| Q |
111 |
tggttttgtgtttttcttgaagttcaaag------att-tttaactatgttgtgaaggtatgccacaccatttggactgacttctgaatatggtcatcct |
203 |
Q |
| |
|
|||||||| |||||||| |||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
26465012 |
tggttttgggtttttctcgaagctcaaaggtgtttattgtttaactatgttgtgaaggtatgccacaccatttggactgacttctgaatacgctcatcct |
26464913 |
T |
|
| Q |
204 |
gctgagattttattccttggatttccgaccatgcttggtcctgctatcactggtcctcacttgattactctttggctatatacggttcttagagtcctcg |
303 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | |
|
|
| T |
26464912 |
gctgagatactattccttggatttgcgaccattgttggtcctgctatcactggtcctcacttgattactctttggctatggatggttcttagagtccttg |
26464813 |
T |
|
| Q |
304 |
agacagttgaggc |
316 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26464812 |
agacagttgaggc |
26464800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 316
Target Start/End: Original strand, 15316053 - 15316216
Alignment:
| Q |
153 |
ttgtgaaggtatgccacaccatttggactgacttctgaatatggtcatcctgctgagattttattccttggatttccgaccatgcttggtcctgctatca |
252 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||||||| ||||||||| || || | |||||||| ||| | ||||| |||| ||||| |||| |
|
|
| T |
15316053 |
ttgtgaaggtatgcgacaccatttggacttacttcggaatatgctcatcctgccgaaatacttttccttgggtttgcaaccattgttggccctgccatca |
15316152 |
T |
|
| Q |
253 |
ctggtcctcacttgattactctttggctatatacggttcttagagtcctcgagacagttgaggc |
316 |
Q |
| |
|
|||| || |||||||| ||| | ||| ||| | |||| | |||||| | |||||||||||||| |
|
|
| T |
15316153 |
ctgggccccacttgataactttgtggttatggatggttgtgagagtcttagagacagttgaggc |
15316216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University