View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_high_10 (Length: 435)
Name: NF16600_high_10
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 43601761 - 43601446
Alignment:
| Q |
1 |
taaaattataataaccacaggtttcaggttgtgatgtgaaatttttatttcattcaattctctaatgatacaagggaggcatatatatggccaatctcaa |
100 |
Q |
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| T |
43601761 |
taaaattataataaccacaggtttcaggttgtgatttgaaatttttatttcattcaattctctaatgatacaagggaggcatatatatggccaatctcaa |
43601662 |
T |
|
| Q |
101 |
atgctaaacataaaagtatacaatacttgcattgcaagtaatcccttaaaactgccacaacactactaagactaataattatttcctctattttactcat |
200 |
Q |
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| T |
43601661 |
atgctaaacataaaagtatacaatacttgcattgcaagtaatcccttaaaactgccacaacactactaagactaataattatttcctctattttactcat |
43601562 |
T |
|
| Q |
201 |
tttttcttaattcaaaccaatgtggaatataaactagttaagctcataatacaatttattttctaaaacaactcaaattcttgataaaatgttttttgta |
300 |
Q |
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| T |
43601561 |
tttttcttaattcaaaccagtgtggaatataaactagttaagctcataatacaatttattttctaaaaaaactcaaattcttgataaaatgttttttgaa |
43601462 |
T |
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| Q |
301 |
accgcaaattttatta |
316 |
Q |
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|||||||||||||||| |
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| T |
43601461 |
accgcaaattttatta |
43601446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 43601446 - 43601369
Alignment:
| Q |
353 |
acctcgggtctctttataactccactccttaactcattcacattaaccattatgtcatatttatattcctttgcttct |
430 |
Q |
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| T |
43601446 |
acctcgggtctctttataactccactccttaactcattcacattaaccattatgtcatatttatattcctttgtttct |
43601369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 29259294 - 29259210
Alignment:
| Q |
92 |
caatctcaaatgctaaacataaaagtatacaatacttgcattgcaagtaatcccttaaaactgccacaacactactaagactaat |
176 |
Q |
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| T |
29259294 |
caatctcaaatgctaaatccaaaagaatagattacttgcattacaagtaattccttaaaactaccacaaaactaccgagactaat |
29259210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 8440748 - 8440677
Alignment:
| Q |
29 |
ttgtgatgtgaaatttttatttcattcaattctctaatgatacaagggaggcatatatatggccaatctcaaa |
101 |
Q |
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|||| ||||||||| || ||||||||| || ||||||||||||||||||||| ||| ||| |||||| ||||| |
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| T |
8440748 |
ttgtaatgtgaaatattgatttcattccat-ctctaatgatacaagggaggcttatttatagccaatttcaaa |
8440677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 1176062 - 1175999
Alignment:
| Q |
37 |
tgaaatttttatttcattcaattctctaatgatacaagggaggcatatatatggccaatctcaaa |
101 |
Q |
| |
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|||||| || |||||||||| ||| ||||||||||||||||||| ||| ||| |||||||||||| |
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| T |
1176062 |
tgaaatattgatttcattca-ttcgctaatgatacaagggaggcttatttatagccaatctcaaa |
1175999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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