View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16600_high_12 (Length: 422)

Name: NF16600_high_12
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16600_high_12
NF16600_high_12
[»] chr1 (1 HSPs)
chr1 (19-422)||(49134745-49135148)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 49135148 - 49134745
Alignment:
Q  19 gctatagtaccactatttaacaacgcttgcaagattacattttttctaagcagataagattacaacattaacgtttgttaaacaacatgccaatggatta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49135148 gctatagtaccactatttaacaacgcttgcaagattacattttttctaagcagataagattacaacattaacgtttgttaaacaacatgccaatggatta 49135049  T
Q  119 ggtaggcaattctctttacagagaaaatgactttgtgtaggtaggagtttcgaagagcttagagactcattttttgaataggaagatgttttgaaaaaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49135048 ggtaggcaattctctttacagagaaaatgactttgtgtaggtaggagtttcgaagagcttagagactcattttttgaataggaagatgttttgaaaaaac 49134949  T
Q  219 ttggaccaaaaaatgtgtatgtcgctttggtacaattggctatatatacagacatacactcatggtgtgtcatacattgccgacnnnnnnntaagacaaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||       |||||||||    
T  49134948 ttggaccaaaaaatgtgtatgtcgctttggtacaattggctatatatacagacatacactcatggtgtgttatacattgctgacaaaaaaataagacaaa 49134849  T
Q  319 tgtaatacgtacaattttgaagctcgttataggggactcataatgtgcacaattgaagtggtggtgtgttgnnnnnnncaacagcaaattgaaaatttta 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  49134848 tgtaatacgtacaattttgaagctcgttataggggactcataatgtgcacaattgaagtggtggtgtgttgtttttttcaacagcaaattgaaaatttta 49134749  T
Q  419 atgg 422  Q
    ||||    
T  49134748 atgg 49134745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University