View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16600_high_15 (Length: 399)

Name: NF16600_high_15
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16600_high_15
NF16600_high_15
[»] chr1 (7 HSPs)
chr1 (3-383)||(7021721-7022102)
chr1 (301-375)||(23431798-23431872)
chr1 (297-348)||(48632762-48632813)
chr1 (295-385)||(16426357-16426447)
chr1 (279-348)||(30883217-30883286)
chr1 (294-334)||(124388-124428)
chr1 (295-375)||(32740775-32740855)
[»] chr4 (3 HSPs)
chr4 (279-375)||(54305565-54305661)
chr4 (279-375)||(55680646-55680742)
chr4 (282-380)||(658573-658671)
[»] chr3 (8 HSPs)
chr3 (295-375)||(21409017-21409097)
chr3 (293-375)||(11410606-11410688)
chr3 (300-375)||(27111153-27111228)
chr3 (294-373)||(27063664-27063743)
chr3 (293-375)||(26565234-26565316)
chr3 (293-375)||(43922100-43922182)
chr3 (330-382)||(14218415-14218467)
chr3 (292-348)||(32706357-32706413)
[»] chr2 (6 HSPs)
chr2 (279-375)||(9929540-9929636)
chr2 (293-386)||(41848942-41849035)
chr2 (295-367)||(27003960-27004032)
chr2 (279-375)||(32200980-32201076)
chr2 (280-385)||(17651169-17651274)
chr2 (293-382)||(16661327-16661416)
[»] chr6 (10 HSPs)
chr6 (293-375)||(19294308-19294390)
chr6 (297-383)||(19542064-19542150)
chr6 (279-375)||(14494596-14494692)
chr6 (280-375)||(12843813-12843908)
chr6 (293-383)||(56931-57021)
chr6 (306-372)||(12790577-12790643)
chr6 (295-375)||(17539942-17540022)
chr6 (279-375)||(34013446-34013542)
chr6 (328-375)||(1255819-1255866)
chr6 (293-375)||(34011308-34011390)
[»] chr5 (4 HSPs)
chr5 (279-383)||(32676783-32676887)
chr5 (293-375)||(40837729-40837811)
chr5 (293-351)||(41815793-41815850)
chr5 (321-385)||(4111968-4112032)
[»] scaffold0325 (1 HSPs)
scaffold0325 (292-375)||(12800-12883)
[»] chr8 (8 HSPs)
chr8 (293-375)||(15132124-15132206)
chr8 (293-382)||(27401746-27401835)
chr8 (293-375)||(28420964-28421046)
chr8 (295-368)||(37855085-37855158)
chr8 (278-347)||(44502199-44502268)
chr8 (328-375)||(1226014-1226061)
chr8 (330-385)||(28869811-28869866)
chr8 (330-375)||(15850613-15850658)
[»] chr7 (4 HSPs)
chr7 (298-375)||(44572574-44572651)
chr7 (295-372)||(27616250-27616327)
chr7 (294-351)||(9730088-9730145)
chr7 (300-368)||(10678270-10678338)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 3 - 383
Target Start/End: Complemental strand, 7022102 - 7021721
Alignment:
Q  3 gaataacatctattcaaagagataagatctttaaatgcatcttcatacctcaagagattagactcaatacccgaaaaagaaatagnnnnnnnn--ggcat 100  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||          |||||    
T  7022102 gaataacatctattaaaagagataagatccttaaatgcatcttcatacctcaagagattagtctcaataccagaaaaagaaaaagaaaaaaaaaaggcat 7022003  T
Q  101 cttatctacaatttttaagaataaaaagcaaataaaatttaagtgataactttccaataaaaaacatgtattttcaagaagaagatattttaaaagtgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||| ||    
T  7022002 cttatctacaatttttaagaataaaaagcaaataaaatttaagtgataattttccagtaaaaaacatgtattttcaagaagaagatattt-aaaagtaaa 7021904  T
Q  201 aaataatgaaaaatccaatatagagaaattccaagaacataattaccataccccgacagaacatctgacacgaacatagacacgtccacattgctaatgt 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7021903 aaatattgaaaaatccaatatagagaaattccaagaacataattaccataccccgacagaacatctgacacgaacatagacacgtccacattgctaatgt 7021804  T
Q  301 aaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaatatatacata 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7021803 aaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaatatatacata 7021721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 301 - 375
Target Start/End: Original strand, 23431798 - 23431872
Alignment:
Q  301 aaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    ||||||||||||||||| | |  ||| ||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  23431798 aaaaaatataggataccgacagtgctacatatatgttaatttatttatatacggtctaaaatgaaaatcaaaata 23431872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 48632813 - 48632762
Alignment:
Q  297 atgtaaaaaatataggataccaataccgcttcatatatattaatttatttat 348  Q
    ||||||||||||||||| ||||  |||||| || ||||||||||||||||||    
T  48632813 atgtaaaaaatataggacaccatcaccgctacacatatattaatttatttat 48632762  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 16426357 - 16426447
Alignment:
Q  295 taatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaatatatacatatg 385  Q
    |||||||||||  |||||| ||  | |||||| | |||||||||||||||||||||| | | |||| | | |||||||||| |||||||||    
T  16426357 taatgtaaaaagcataggacactgacaccgctacctatatattaatttatttataaaagatataaattaagaatcaaaatacatacatatg 16426447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 30883286 - 30883217
Alignment:
Q  279 gacacgtccacattgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttat 348  Q
    |||||||| |||  |||||||||||||| |||||| ||| | |||||| |||||||||| ||| ||||||    
T  30883286 gacacgtcaacaccgctaatgtaaaaaacataggacaccgacaccgctgcatatatatttattaatttat 30883217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 124388 - 124428
Alignment:
Q  294 ctaatgtaaaaaatataggataccaataccgcttcatatat 334  Q
    ||||||||||||||||||||||| || |||||| |||||||    
T  124388 ctaatgtaaaaaatataggatactaacaccgctacatatat 124428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 32740775 - 32740855
Alignment:
Q  295 taatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    ||||||||||||||||||| ||  | ||| || ||||||| ||||||||| || | | ||| |||||||||||| ||||||    
T  32740775 taatgtaaaaaatataggacactgacaccactacatatatgttaatttatctaaagatggtctaaaatgaaaattaaaata 32740855  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 54305565 - 54305661
Alignment:
Q  279 gacacgtccacattgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||| |||| ||||||||||||| ||||||| ||| | |||||| ||||||| |||||||||||| | |||||||||||||||||| ||||||    
T  54305565 gacacgtcgacatcgctaatgtaaaaattataggacaccgacaccgctacatatatgttaatttatttaaagacggtttaaaatgaaaattaaaata 54305661  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 55680646 - 55680742
Alignment:
Q  279 gacacgtccacattgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||| |||  ||||||||||||||||||||| ||| | |||| | | ||||| |||||||||||| | || || |||| ||||||| ||||||    
T  55680646 gacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttatttaaagaccgtctaaagtgaaaattaaaata 55680742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 380
Target Start/End: Complemental strand, 658671 - 658573
Alignment:
Q  282 acgtccacattgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaatatatac 380  Q
    ||||| ||| |||||||||||||||| ||||| ||| | | ||   |||||||| ||||||||| ||| | ||| |||||||||||| |||||| ||||    
T  658671 acgtcaacactgctaatgtaaaaaatctaggacaccgacagcgacacatatatagtaatttattaatagagggtctaaaatgaaaataaaaatacatac 658573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 375
Target Start/End: Complemental strand, 21409097 - 21409017
Alignment:
Q  295 taatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    ||||||||||||||||||||||  | |||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  21409097 taatgtaaaaaatataggatactgacaccgctacatatatgttaatttatttatatacggtctaaaatgaaaatcaaaata 21409017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 11410606 - 11410688
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||| ||||||| |||||||| ||| | |||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  11410606 gctagtgtaaaatatataggacaccgacaccgctacatatatgttaatttatttatatacggtctaaaatgaaaatcaaaata 11410688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 27111228 - 27111153
Alignment:
Q  300 taaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||||||||| ||| | |||  | ||||||| |||||||||||||||||||| |||||||||||||||||||    
T  27111228 taaaaaatataggacaccgacaccattacatatatgttaatttatttataaacggtctaaaatgaaaatcaaaata 27111153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 27063664 - 27063743
Alignment:
Q  294 ctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaa 373  Q
    |||||||||||||||||||  |  || |||| | |||||||||||||||||||||| ||||| |||||||| ||||||||    
T  27063664 ctaatgtaaaaaatatagggcataaacaccggtacatatatattaatttatttatagacggtctaaaatgataatcaaaa 27063743  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 26565234 - 26565316
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||||||||||| |||| ||  | |||| | ||||||| |||||||||||||| | ||| |||||||||||||||||||    
T  26565234 gctaatgtaaaaaatacaggacactgacaccgttacatatatgttaatttatttatatatggtctaaaatgaaaatcaaaata 26565316  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 375
Target Start/End: Complemental strand, 43922182 - 43922100
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||| |||||||||||||||| ||| | ||| || |||| || |||||||||||||| | ||| ||| |||||||| ||||||    
T  43922182 gctagtgtaaaaaatataggacaccgacacctctacatacatgttaatttatttatatatggtctaacatgaaaataaaaata 43922100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 14218415 - 14218467
Alignment:
Q  330 tatatattaatttatttataaacggtttaaaatgaaaatcaaaatatatacat 382  Q
    ||||| |||||||||||||| | | | ||||||||||||||||||| ||||||    
T  14218415 tatatgttaatttatttatataagatctaaaatgaaaatcaaaatacatacat 14218467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 32706413 - 32706357
Alignment:
Q  292 tgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttat 348  Q
    |||||||||||||||||||||| ||||| || ||| ||| |||||| ||| ||||||    
T  32706413 tgctaatgtaaaaaatataggacaccaacactgctacatttatatttattaatttat 32706357  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 9929540 - 9929636
Alignment:
Q  279 gacacgtccacattgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||| |||  ||||||||||||||||||||| ||||| || ||| ||||||| |||||||||||| | ||||| |||||||||||| ||||||    
T  9929540 gacacgtcgacaccgctaatgtaaaaaatataggacaccaacactgctacatatatgttaatttatttaaagacggtctaaaatgaaaattaaaata 9929636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 386
Target Start/End: Original strand, 41848942 - 41849035
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaatatatacatatga 386  Q
    ||||||||||||||||||||| ||| | ||||||   ||||||||||||||||||||||   | |||| ||| |||||||||| ||||||||||    
T  41848942 gctaatgtaaaaaatataggacaccgacaccgctatctatatattaatttatttataaaatatctaaattgagaatcaaaatacatacatatga 41849035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 27003960 - 27004032
Alignment:
Q  295 taatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaa 367  Q
    ||||||||||||||||||| ||| | |||||| | ||||| |||||||||||| | ||||| |||||||||||    
T  27003960 taatgtaaaaaatataggacaccgacaccgctacgtatatgttaatttatttaaagacggtctaaaatgaaaa 27004032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 375
Target Start/End: Complemental strand, 32201076 - 32200980
Alignment:
Q  279 gacacgtccacattgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||| |||  ||||||||||||||||||||| ||| | |||  |  |||||| |||||||||||| | ||||| |||||||||||| ||||||    
T  32201076 gacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccattaaatatatgttaatttatttaaagacggtctaaaatgaaaattaaaata 32200980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 385
Target Start/End: Original strand, 17651169 - 17651274
Alignment:
Q  280 acacgtccacattgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaatatata 379  Q
    ||||||| |||| |||||| ||||||| |||||||||  | ||||||   |||||||||||||||||||| | | | |||| | |||| ||||||| |||    
T  17651169 acacgtcgacatcgctaatataaaaaacataggatactgacaccgctggctatatattaatttatttatataagatctaaattaaaaaccaaaatacata 17651268  T
Q  380 catatg 385  Q
    ||||||    
T  17651269 catatg 17651274  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 382
Target Start/End: Complemental strand, 16661416 - 16661327
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaatatatacat 382  Q
    |||||||||| ||| || ||| ||| |||||||| |||||||||||||| || |||||| | | |||| ||| ||||| |||| ||||||    
T  16661416 gctaatgtaataaacattggacaccgataccgctacatatatattaattcatgtataaaagatctaaattgagaatcagaatacatacat 16661327  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 19294308 - 19294390
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    ||||||||||||||||||||| ||| |||||||| ||||||| |||||||||||| | ||||| ||||||| |||| ||||||    
T  19294308 gctaatgtaaaaaatataggacaccgataccgctacatatatgttaatttatttaaagacggtctaaaatggaaattaaaata 19294390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 19542064 - 19542150
Alignment:
Q  297 atgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaatatatacata 383  Q
    |||||||||| |||||| | | |||| ||| ||||||| |||||||||||||| ||||| |||||| |||||||||||| |||||||    
T  19542064 atgtaaaaaacataggacatcgatactgctacatatatgttaatttatttatagacggtataaaattaaaatcaaaatacatacata 19542150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 375
Target Start/End: Complemental strand, 14494692 - 14494596
Alignment:
Q  279 gacacgtccacattgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||| |||  |||||||||||| ||| |||| ||| | |||||| ||||||| |||||||||||| | ||||| |||||||||||| ||||||    
T  14494692 gacacgtcgacaccgctaatgtaaaatatacaggacaccgacaccgctacatatatgttaatttatttaaagacggtctaaaatgaaaattaaaata 14494596  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 12843813 - 12843908
Alignment:
Q  280 acacgtccacattgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    ||||||| ||| ||||||| ||| |||||||||| || || || ||| ||||||| |||||||||||| | ||||| |||||||||||| ||||||    
T  12843813 acacgtcgacactgctaatataacaaatataggacactaacactgctacatatatgttaatttatttaaagacggtctaaaatgaaaatgaaaata 12843908  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 383
Target Start/End: Original strand, 56931 - 57021
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaatatatacata 383  Q
    |||||| |||||||||||||| || || |||||| ||||||| ||||||||| |||| ||||| ||||  |||||| ||||||||| ||||    
T  56931 gctaatataaaaaatataggacacgaacaccgctacatatatgttaatttatctatagacggtctaaatcgaaaattaaaatatattcata 57021  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 372
Target Start/End: Complemental strand, 12790643 - 12790577
Alignment:
Q  306 atataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaa 372  Q
    |||||||| ||| | |||||| ||||||| |||||||||||||| ||| | ||||||||||||||||    
T  12790643 atataggacaccgacaccgctacatatatgttaatttatttatatacgatctaaaatgaaaatcaaa 12790577  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 17539942 - 17540022
Alignment:
Q  295 taatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||||||||||| || ||| | |||  | ||||||| |||||||||||| | ||||| |||||||||||| ||||||    
T  17539942 taatgtaaaaaatataagacaccgacaccattacatatatgttaatttatttaaagacggtctaaaatgaaaattaaaata 17540022  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 34013446 - 34013542
Alignment:
Q  279 gacacgtccacattgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||| |||  ||||||||||||||||||||| ||| | |||| | | ||||| |||||||||||| | || || |||| ||||||| ||||||    
T  34013446 gacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttatttaaagaccgtctaaagtgaaaattaaaata 34013542  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 1255866 - 1255819
Alignment:
Q  328 catatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    ||||||| ||||||||||| || ||||| |||||||||||||||||||    
T  1255866 catatatgttaatttatttgtagacggtctaaaatgaaaatcaaaata 1255819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 375
Target Start/End: Complemental strand, 34011390 - 34011308
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    ||||||||||||||||||||| ||| | |||| | | ||||| |||||||||||| | || || |||| ||||||| ||||||    
T  34011390 gctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttatttaaagaccgtctaaagtgaaaattaaaata 34011308  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 383
Target Start/End: Complemental strand, 32676887 - 32676783
Alignment:
Q  279 gacacgtccacattgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaatatat 378  Q
    |||||||| |||  |||||||||||||| |||||| ||| |  | ||| ||||||| ||||||||||| || ||||| ||||||||||||||||||| ||    
T  32676887 gacacgtcgacaccgctaatgtaaaaaaaataggacaccgaccctgctacatatatgttaatttatttttagacggtctaaaatgaaaatcaaaatacat 32676788  T
Q  379 acata 383  Q
    |||||    
T  32676787 acata 32676783  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 40837729 - 40837811
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||| ||||||||||||| || ||  | ||||||  |||||| |||||||||||||| ||||| |||||||||||||||||||    
T  40837729 gctagtgtaaaaaatataagacactgacaccgctagatatatgttaatttatttatatacggtctaaaatgaaaatcaaaata 40837811  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 41815850 - 41815793
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaa 351  Q
    |||||||||||||| |||||| ||| | |||||| ||||||||||||||||||||||||    
T  41815850 gctaatgtaaaaaa-ataggacaccgacaccgctacatatatattaatttatttataaa 41815793  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 385
Target Start/End: Original strand, 4111968 - 4112032
Alignment:
Q  321 accgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaatatatacatatg 385  Q
    |||||| | ||||||||||||||| |||||| | | |||| ||| |||||||||| |||||||||    
T  4111968 accgctacttatatattaatttatatataaaagatctaaattgagaatcaaaatacatacatatg 4112032  T

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Target: scaffold0325 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 12800 - 12883
Alignment:
Q  292 tgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    ||||||||||||||||| |||| ||| | |||||| |||||||||||||||||||| | | ||  |||||||||||||||||||    
T  12800 tgctaatgtaaaaaatacaggacaccgacaccgctacatatatattaatttatttacagaaggcctaaaatgaaaatcaaaata 12883  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 375
Target Start/End: Complemental strand, 15132206 - 15132124
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||||||| |||||||| ||||| |||||| ||||||| |||||||||| | | || ||||||||||||||| ||||||    
T  15132206 gctaatgtaaaatatataggacaccaacaccgctacatatatgttaatttattcaaagacagtttaaaatgaaaattaaaata 15132124  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 382
Target Start/End: Original strand, 27401746 - 27401835
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaatatatacat 382  Q
    |||||||||||||| ||||||  |||||||||||   ||||||||||||||||||||||  || | || ||| |||||||||||||||||    
T  27401746 gctaatgtaaaaaacataggacgccaataccgctatctatatattaatttatttataaaatgtctcaattgagaatcaaaatatatacat 27401835  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 28420964 - 28421046
Alignment:
Q  293 gctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    ||||||||| ||||||||||| ||| | |||  | ||||||| |||||||||||| | ||||| |||||||||||| ||||||    
T  28420964 gctaatgtagaaaatataggacaccgacaccattacatatatgttaatttatttaaagacggtctaaaatgaaaattaaaata 28421046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 37855085 - 37855158
Alignment:
Q  295 taatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaat 368  Q
    ||||||||||||||||||| ||| | |||||| ||||||| || ||||||||| | ||||| |||||| |||||    
T  37855085 taatgtaaaaaatataggacaccgacaccgctacatatatgttcatttatttaaagacggtctaaaataaaaat 37855158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 44502199 - 44502268
Alignment:
Q  278 agacacgtccacattgctaatgtaaaaaatataggataccaataccgcttcatatatattaatttattta 347  Q
    |||| |||| |||||||||||||||||||||||||| ||| | || | | ||||||| ||||||||||||    
T  44502199 agacgcgtcgacattgctaatgtaaaaaatataggacaccgacactgttacatatattttaatttattta 44502268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 1226014 - 1226061
Alignment:
Q  328 catatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||| ||||||||||||| | ||| |||||||||||||||||||    
T  1226014 catatatagtaatttatttatagagggtctaaaatgaaaatcaaaata 1226061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 28869811 - 28869866
Alignment:
Q  330 tatatattaatttatttataaacggtttaaaatgaaaatcaaaatatatacatatg 385  Q
    ||||||||||||||||||||||   |||||| ||| |||||||||| |||||||||    
T  28869811 tatatattaatttatttataaaatatttaaattgagaatcaaaatacatacatatg 28869866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 15850658 - 15850613
Alignment:
Q  330 tatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||||||||||||||| |  || |||||||||||||||||||    
T  15850658 tatatattaatttatttatagatagtctaaaatgaaaatcaaaata 15850613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 44572651 - 44572574
Alignment:
Q  298 tgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaaata 375  Q
    |||||||||||||||| ||| | |||||| ||||||| |||||||||||| |   ||| |||||||||||||||||||    
T  44572651 tgtaaaaaatataggaaaccgacaccgctacatatatgttaatttatttaaagttggtctaaaatgaaaatcaaaata 44572574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 372
Target Start/End: Original strand, 27616250 - 27616327
Alignment:
Q  295 taatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaatcaaa 372  Q
    |||||||||||||| |||| ||| | |||||| ||| ||| ||||||||||||||   ||| ||||||||||||||||    
T  27616250 taatgtaaaaaatacaggacaccgacaccgctacatgtatgttaatttatttataggtggtctaaaatgaaaatcaaa 27616327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 9730145 - 9730088
Alignment:
Q  294 ctaatgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaa 351  Q
    |||||||||||||||||| | ||  | |||||| | ||||||||||||||||||||||    
T  9730145 ctaatgtaaaaaatatagaacactgacaccgctacctatatattaatttatttataaa 9730088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 10678270 - 10678338
Alignment:
Q  300 taaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtttaaaatgaaaat 368  Q
    |||||||||||||| ||| | | || |  ||||||||||||||||||||| | ||| ||||||||||||    
T  10678270 taaaaaatataggacaccgacatcgttagatatatattaatttatttatatatggtctaaaatgaaaat 10678338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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