View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_high_16 (Length: 397)
Name: NF16600_high_16
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 190 - 380
Target Start/End: Complemental strand, 13503997 - 13503807
Alignment:
| Q |
190 |
gtctcgtattaatgattgaaaagtgcctctcacactataaagcaaccccttccataatcccaattcatttcatttttcattgtcttttgtgtaattaacc |
289 |
Q |
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| T |
13503997 |
gtctcgtattaatgattgaaaagtgcctctcacactataaagcaaccccttccataatcccaattcatttcatttttcacagtcttttgtgtaattaacc |
13503898 |
T |
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| Q |
290 |
tagtactaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcac |
380 |
Q |
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| T |
13503897 |
tagtactaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcac |
13503807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 13504158 - 13504057
Alignment:
| Q |
31 |
tcaacacatattttcgtaattatagcggttcatgccccgtgtgaaaatcaatggaataacta--acgaccatataactataaggtaattatacattcttg |
128 |
Q |
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| T |
13504158 |
tcaacacatattttcgtaattatagcggttcatgtcccgtgtgaaaatcaatggaataactaacacgaccatataactataaggtaattatacattcttg |
13504059 |
T |
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| Q |
129 |
tc |
130 |
Q |
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| T |
13504058 |
tc |
13504057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 376
Target Start/End: Complemental strand, 1865727 - 1865645
Alignment:
| Q |
294 |
actaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatca |
376 |
Q |
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| T |
1865727 |
actaagtacacaatgaagatgaagattgttgcttttgttgttgtcctcttagccgccataagctccgttatggcacgtgatca |
1865645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 52500988 - 52501046
Alignment:
| Q |
322 |
ttgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcac |
380 |
Q |
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| T |
52500988 |
ttgcttttgttgttgtcctcttagctaccatatgctccgttctggcacatgatcatcac |
52501046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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