View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_high_2 (Length: 813)
Name: NF16600_high_2
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 502 - 798
Target Start/End: Complemental strand, 29770139 - 29769843
Alignment:
| Q |
502 |
agagagtacctaccttcaaatttttatcaagttttcccgcgagagccataagtaaagaggatttgccggaacctggaggtccaagtagcaaagtcatcct |
601 |
Q |
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| T |
29770139 |
agagagtacctaccttcaaatttttatcaagttttcccgcgagagccataagtaaagaggatttgccggaacctggaggtccaagtagcaaagtcatcct |
29770040 |
T |
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| Q |
602 |
acacaacaaaaagctagttaccacgtagcaaagtcacacgtaaacttctcaacctagatagactcttttcccgtgataacaacatcacgttttttccgat |
701 |
Q |
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| T |
29770039 |
acacaacaaaaagctagttaccacatagcaaagtcacacgtaaacttctcaacctacatagactcttttcccgtgataacaacatcacgttttttccgat |
29769940 |
T |
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| Q |
702 |
tccattcccaatttcaaccacacaaagatagtaactaacaactttatcattaaaatcacaaaaacttttttgttgagtttagttccgtagcaatcac |
798 |
Q |
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| T |
29769939 |
tccattcccaatttcaaccacacaaagatagtaactaacaactttatcatcaaaatcacaaaaacttttttgttgagtttagttccgtagcaatcac |
29769843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 181 - 439
Target Start/End: Complemental strand, 29770460 - 29770204
Alignment:
| Q |
181 |
gaatgctactcctacacaaacaatcaacaagaccaacacgccactcatagaatagcctcttgtccttcaatttttaacattgatattttagaccccatat |
280 |
Q |
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| T |
29770460 |
gaatgctactcctacacaaacaatcaacaagaccaacacaccactcatagaatagcctcttgtccttcaatttttaacattgatattttagacaccatat |
29770361 |
T |
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| Q |
281 |
taatccccaaatccatttaacatattatttctattaaattatccaaacttatcacatcannnnnnnnctatctttcttccatctcaaagtgtacacccat |
380 |
Q |
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| T |
29770360 |
taatccccaaatccatttaacatattatttctattaaattatccaaacttatcacatcatttttttcctatctttcttcaatctcaaagtgtacaccc-- |
29770263 |
T |
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| Q |
381 |
atatatacaccaacaatttgcttaannnnnnnnnataaaagaagcataaagttatatat |
439 |
Q |
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| T |
29770262 |
atatattcaccaacaatttgcttaatttttttttataaaagaagcataaagttatatat |
29770204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 29770606 - 29770517
Alignment:
| Q |
32 |
aattaatctcaggcttatgttagttaatcctacgataaattgtaataaagacaaagatgaaatcatataaattagagggtaatgggtgtt |
121 |
Q |
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| T |
29770606 |
aattaatctcaggcttatgttagttaatcctacgataaattgtaataaagacaaagatgaaatcatataaattagagggtaatgggtgtt |
29770517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 29770658 - 29770624
Alignment:
| Q |
14 |
aggtagaggagaggatacaattaatctcaggctta |
48 |
Q |
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| T |
29770658 |
aggtagaagagaggatacaattaatctcaggctta |
29770624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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