View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_high_20 (Length: 377)
Name: NF16600_high_20
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 1415706 - 1415362
Alignment:
| Q |
18 |
atgaaccttggtataattttaaagtctgactaacgattgttttagtgaggttcaattcatattctttcaaacaattttaaccgaaactcaacaacttccg |
117 |
Q |
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| T |
1415706 |
atgaagcttggtataattttaaagtctgactaacgatcgttttagtgaggttcaattcagattctttcaaacaattttaatcgaaatttaacaacttccg |
1415607 |
T |
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| Q |
118 |
atcaaccacggttagtactaacctatatattatacgtaataatcataacatatttgaaatatagaaatatatttttaatgaagagattaaataagcaaga |
217 |
Q |
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| T |
1415606 |
ttcaaccgtggttaatattaacctatatattatacgtgataatcataacatatttgaaatatagaaatatatttttaatgaagagattaattaagcaaga |
1415507 |
T |
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| Q |
218 |
ataatatgaatgaaggattaattaccttggatgaagactattcttgacaactttttgaccatacttcctccatttgtaaccatcatcaagcacatctaca |
317 |
Q |
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| T |
1415506 |
ataatatgaatgaaggattaattaccttggatgaagactattcttgacaactttttgaccatacttcctccatttgtaaccatcatcaagcacatctaca |
1415407 |
T |
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| Q |
318 |
tcacttcttgtctggaaacaaaaccttggctctctaagtttcctc |
362 |
Q |
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| T |
1415406 |
tcacttcttgtctggaaacaaaaccttggctctctaagtttcctc |
1415362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 38496022 - 38496084
Alignment:
| Q |
258 |
ttcttgacaactttttgaccatacttcctccatttgtaaccatcatcaagcacatctacatca |
320 |
Q |
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| T |
38496022 |
ttctttacaactttttgtccatacttcctccacttgtaaccatcatccaacacatccacatca |
38496084 |
T |
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