View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_high_21 (Length: 371)
Name: NF16600_high_21
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 43612052 - 43612382
Alignment:
| Q |
18 |
atgaatataggaaattgatagtacttacgaggtgagaaggcgaaagtgatgagcagtatcttgatgaagcatgttagagaggattgcatctagaagcaga |
117 |
Q |
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| T |
43612052 |
atgaatataggaaattgatagtacttacgaggtgagaaggcgaaagtgatgagcagtatcttgatgaagcatgttagagaggattgcatctagaagctgg |
43612151 |
T |
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| Q |
118 |
gacttggaaacagggatgtgtttctgtctaggcacttgtattttagaaattccca---cttctnnnnnnnnnnnnnnnnnnnncttggagtttttcttgt |
214 |
Q |
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| T |
43612152 |
gacttggaaacagggatgtgtttctgtctaggcacttgtattttagaaattcccacttcttcatcatcatcatcatcatcatccttggagtttttcttgt |
43612251 |
T |
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| Q |
215 |
tgttggggttttcactctgcctcacttgttcttgtgactctgaggcaacagatactatttcctgaagccttgaacaaggaagcctgtgttgtctgagaag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43612252 |
tgttggggttttcactctgcctcacttgttcttgtgactctgaggcaacagatactatttcctgaagccttgaacaaggaagcctgtgttgtctgagaag |
43612351 |
T |
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| Q |
315 |
tggagaagagagtaactgctgccggtggcgg |
345 |
Q |
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| T |
43612352 |
tggagaagagagtaactgctgccggtggcgg |
43612382 |
T |
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