View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16600_high_24 (Length: 351)

Name: NF16600_high_24
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16600_high_24
NF16600_high_24
[»] chr8 (2 HSPs)
chr8 (87-184)||(35885133-35885230)
chr8 (261-336)||(35884985-35885060)
[»] chr4 (2 HSPs)
chr4 (87-184)||(24459334-24459431)
chr4 (261-336)||(24459186-24459261)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 35885230 - 35885133
Alignment:
Q  87 ctctctacatctgttgtttccagtggcatgcgagacaatctataacacgtaacatgtgaataagcatgcattagaggacacagttaaccaacaaagat 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35885230 ctctctacatctgttgtttccagtggcatgcgagacaatctataacacgtaacatgtgaataagcatgcattagaggacacagttaaccaacaaagat 35885133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 35885060 - 35884985
Alignment:
Q  261 tcgaacatgatttatctttttaactaaagtgaagaaaacatataaaagaaaaagagtaggtaataaaatatggaag 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35885060 tcgaacatgatttatctttttaactaaagtgaagaaaacatataaaagaaaaagagtaggtaataaaatatggaag 35884985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 24459431 - 24459334
Alignment:
Q  87 ctctctacatctgttgtttccagtggcatgcgagacaatctataacacgtaacatgtgaataagcatgcattagaggacacagttaaccaacaaagat 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24459431 ctctctacatctgttgtttccagtggcatgcgagacaatctataacacgtaacatgtgaataagcatgcattagaggacacagttaaccaacaaagat 24459334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 24459261 - 24459186
Alignment:
Q  261 tcgaacatgatttatctttttaactaaagtgaagaaaacatataaaagaaaaagagtaggtaataaaatatggaag 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24459261 tcgaacatgatttatctttttaactaaagtgaagaaaacatataaaagaaaaagagtaggtaataaaatatggaag 24459186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University