View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_high_28 (Length: 319)
Name: NF16600_high_28
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 43602024 - 43601739
Alignment:
| Q |
18 |
gataacaattctataaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgt |
117 |
Q |
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| T |
43602024 |
gataacgattctataaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgt |
43601925 |
T |
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| Q |
118 |
gcggggctgtgttttggtgcagaaataattttcataatttgaagatatcatatcaattggagacataattctcagttccctttcagttgtactcagtcta |
217 |
Q |
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| T |
43601924 |
gcggggctgtgttttggtgcagaaataattttcataatttgaagatatcatatcaattggagacataattctcagttccctttcagttgtactcagtcta |
43601825 |
T |
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| Q |
218 |
gcatatgcccagatttatatcagcatttgccaattgccattgcaacttcgcacaaagcatcattaaaattataataaccacaggtt |
303 |
Q |
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| T |
43601824 |
gcatatgcccagatttatagcagcatttgccaattgccaatgcaacttcgcacaaagcatcattaaaattataataaccacaggtt |
43601739 |
T |
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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 22436220 - 22436340
Alignment:
| Q |
48 |
cacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaaataatt |
147 |
Q |
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| T |
22436220 |
cacgtgatgcatgtgacagaccgcaaattattgtcaattggaaccgttataagaggcaactttatcatgtgcgggagtatgttttggtgcagaaatcatt |
22436319 |
T |
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| Q |
148 |
ttcataatttgaagatatcat |
168 |
Q |
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| T |
22436320 |
ttcataattttaagatatcat |
22436340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 22239084 - 22239135
Alignment:
| Q |
117 |
tgcggggctgtgttttggtgcagaaataattttcataatttgaagatatcat |
168 |
Q |
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| T |
22239084 |
tgcgggactgtgttttggtgcagaaataattttcataattttaagatatcat |
22239135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 37560602 - 37560653
Alignment:
| Q |
117 |
tgcggggctgtgttttggtgcagaaataattttcataatttgaagatatcat |
168 |
Q |
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| T |
37560602 |
tgcgggactgtgttttggtgcagaaataattttcataattttaagatatcat |
37560653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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