View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_high_29 (Length: 313)
Name: NF16600_high_29
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 16149818 - 16149606
Alignment:
| Q |
17 |
accaacagtatggagatgctgttgcatttgatactacttacaaggtaaatacttataatatgccttttggcatttttgttggagtcgacaatcacggcag |
116 |
Q |
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| T |
16149818 |
accaacagtatggagatgctgttgcatttgatactacttacaaggtaaatacttataatatgccttttggcatttttgttggagtcgacaatcacggcag |
16149719 |
T |
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| Q |
117 |
aacaatattgtttggttgtgcgctcattcgaaatgaaacagtgtctacatttcaatggttaatgaaagtaagttcatatacatctctct---tttttatt |
213 |
Q |
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| T |
16149718 |
aacaatattgtttggttgtgcgctcattcgaaatgaaacggtgtctacatttcaatggttaatgaaagtaagttcatatacatctctctctctttttatt |
16149619 |
T |
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| Q |
214 |
aacattcatagac |
226 |
Q |
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| T |
16149618 |
accattcatagac |
16149606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 44 - 226
Target Start/End: Original strand, 23302268 - 23302453
Alignment:
| Q |
44 |
ttgatactacttacaaggtaaatacttataatatgccttttggcatttttgttggagtcgacaatcacggcagaacaatattgtttggttgtgcgctcat |
143 |
Q |
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| T |
23302268 |
ttgatactacttacaaggtaaatacttataatatgccttttggcatctttgttgtaatcgacaatcacggcagaacaatattgtttggttgtgcgctcat |
23302367 |
T |
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| Q |
144 |
tcgaaatgaaacagtgtctacatttcaatggttaatgaaagtaagttcatatacatctctc---ttttttattaacattcatagac |
226 |
Q |
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| T |
23302368 |
tcgaaatgaaacagtgtctacatttcaatggttaatgaaagtaagttcatatacatctctctctttttttattaacatttatagac |
23302453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 44680276 - 44680212
Alignment:
| Q |
31 |
gatgctgttgcatttgatactacttacaaggtaaatacttataatatgccttttggcatttttgt |
95 |
Q |
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| T |
44680276 |
gatgttgttgtatttgatactacatacaaggtcaattcttatgaaatgccatttgggatttttgt |
44680212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 4652404 - 4652234
Alignment:
| Q |
26 |
atggagatgctgttgcatttgatactacttacaaggtaaatacttataatatgccttttggcatttttgttggagtcgacaatcacggcagaacaatatt |
125 |
Q |
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| T |
4652404 |
atggagatgatgttgcatttgagactatttacaaggtacatacttataatatgccttttggcatttttgttggaatcgacaat--------------att |
4652319 |
T |
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| Q |
126 |
gtttggttgtgcgctcattcgaaatgaaacagtgtctacatttcaatggttaatgaaagtaagttcatatacatctctctttttt |
210 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
4652318 |
gtttggttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatctctctctttt |
4652234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 14198154 - 14198218
Alignment:
| Q |
31 |
gatgctgttgcatttgatactacttacaaggtaaatacttataatatgccttttggcatttttgt |
95 |
Q |
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|||| ||||| |||||||||||| |||||||| ||| ||||| | ||||| ||||| |||||||| |
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| T |
14198154 |
gatgttgttgtatttgatactacatacaaggtcaattcttatgaaatgccatttgggatttttgt |
14198218 |
T |
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