View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16600_high_30 (Length: 308)
Name: NF16600_high_30
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 27807452 - 27807731
Alignment:
| Q |
16 |
attgaaaaataaaatagtcttttaatgcattgaagtatattataatcatgttgagctccatcttgaaatattatcttggtgatagattaatagagatagt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
27807452 |
attgaaaaataaaatagtcttttaatgcattgaagtatattataatcatgttgagctccatcttgaaatattatcttggtgatggattaatggagatagt |
27807551 |
T |
|
| Q |
116 |
ggaaattttggtcttaaattttgaaattagagtggtaatcagataattagtttctaaacaatttaaataatcagagaattatatgagggagttggacaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27807552 |
ggaaattttggtcttaaattttgaaattagagtggtaatcagataattagtttctaaacaatttaaataatcagagaattatatgagggagttggacaac |
27807651 |
T |
|
| Q |
216 |
ttcattctccattgtaatttcttttttcacttccatctgtttgagacctattatgttgatatgttatgtttgttggagaat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27807652 |
ttcattctccattgtaatttcttttttcacttccatctgtttgtgacctattatgttgatatgttatg-ttgttggagaat |
27807731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 27815240 - 27815436
Alignment:
| Q |
16 |
attgaaaaataaaatagtcttttaatgcattgaagtatattataatcatgttgagctccatcttgaaatattatcttggtgatagattaatagagatagt |
115 |
Q |
| |
|
|||||||||||||| ||||||||| | || |||||| ||||||||||||||||||||| | ||||||||||||| ||||||| | ||||| |||| || |
|
|
| T |
27815240 |
attgaaaaataaaacagtcttttatcgtatcgaagtagattataatcatgttgagctccgtgttgaaatattatcatggtgatggtttaatggagagagc |
27815339 |
T |
|
| Q |
116 |
ggaaattttggtcttaaattttgaaattagagtggtaatcagataattagtttctaaacaatttaaataatcagagaattatatgagggagttggac |
212 |
Q |
| |
|
|||| | ||||||||||||||||||||| || ||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
27815340 |
tgaaaatatggtcttaaattttgaaattaaagcagtaatcaaatgattagtttctaaacaatttaaataatgagagaattatatgacagagttggac |
27815436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University