View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16600_high_35 (Length: 274)

Name: NF16600_high_35
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16600_high_35
NF16600_high_35
[»] chr4 (7 HSPs)
chr4 (18-267)||(10986653-10986883)
chr4 (26-263)||(11095648-11095890)
chr4 (26-168)||(11106443-11106585)
chr4 (51-157)||(11099889-11099998)
chr4 (191-254)||(11106351-11106414)
chr4 (25-126)||(11248295-11248396)
chr4 (203-243)||(11099810-11099850)
[»] chr8 (1 HSPs)
chr8 (23-158)||(13308146-13308281)
[»] chr7 (5 HSPs)
chr7 (23-162)||(19004697-19004836)
chr7 (23-162)||(18950373-18950512)
chr7 (23-158)||(18949680-18949816)
chr7 (23-158)||(19004004-19004140)
chr7 (56-126)||(15868052-15868122)
[»] chr3 (3 HSPs)
chr3 (26-147)||(29358260-29358381)
chr3 (62-126)||(27530690-27530754)
chr3 (62-126)||(27548346-27548410)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 10986883 - 10986653
Alignment:
Q  18 catcgattccacatagggtgctaagttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaa 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10986883 catcgattccacaaagggtgctaagttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattcacaatgaa 10986784  T
Q  118 ggcaagtttaacttttcttctagtcatggttgtgacaagaacaaaagacaatgaaacttgagnnnnnnnntgattgtggtattttttgttgtgaataatg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||    
T  10986783 ggcaagtttaacttttcttctagtcatggttgtgacaagaacaaaagacaa-------------------tgattgtggtattttttgttgtgaataatg 10986703  T
Q  218 tctcagtactttttgtttatatagacatatttgatatagatggtttcatt 267  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  10986702 tctcaatactttttgtttatatagacaaatttgatatagatggtttcatt 10986653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 26 - 263
Target Start/End: Complemental strand, 11095890 - 11095648
Alignment:
Q  26 ccacatagggtgctaagttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagtt 125  Q
    ||||| ||||||||||||||| |||||||||| || |||| |||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  11095890 ccacagagggtgctaagttcaacaacctttttgaacagactcttcttccttttcttgtatgctgctttccttgcagcatcgttgacaatgaaggcaagtt 11095791  T
Q  126 taacttttcttctagtcatggttgtgacaagaacaaaagacaatgaaacttg--agnnnnnnnntga---ttgtggtattttttgttgtgaataatgtct 220  Q
    |||| ||  |||||  ||||||||||||||||||||||||||||||||||||  ||        |||   ||||||||||| ||||||||||||||||||    
T  11095790 taaccttagttctaaccatggttgtgacaagaacaaaagacaatgaaacttgaaagaaaaaagttgattgttgtggtatttcttgttgtgaataatgtct 11095691  T
Q  221 cagtactttttgtttatatagacatatttgatatagatggttt 263  Q
    || ||||||||| ||||||||||  |||||||||  |||||||    
T  11095690 cattactttttggttatatagaccaatttgatatgcatggttt 11095648  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 11106585 - 11106443
Alignment:
Q  26 ccacatagggtgctaagttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagtt 125  Q
    ||||| ||||||||||||||| |||||||||| ||||||| |||||| |||||||| |||| ||||||||| ||||||||||||||||||||||||||||    
T  11106585 ccacagagggtgctaagttcaacaacctttttgaatagactcttcttccttttcttatatgctgctttcctagcagcatcattgacaatgaaggcaagtt 11106486  T
Q  126 taacttttcttctagtcatggttgtgacaagaacaaaagacaa 168  Q
    |||| || | ||||  |||||||||||||||| |||| |||||    
T  11106485 taaccttacctctaaccatggttgtgacaagagcaaaggacaa 11106443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 11099998 - 11099889
Alignment:
Q  51 cctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagtttaactt---ttcttctagtcatggt 147  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |   ||||||||  ||||||    
T  11099998 cctttttgaatagactcttcttccttttcttgtatgttgctttcctagcagcatcattgacaatgaaggcaagtttaaccttacttcttctacccatggt 11099899  T
Q  148 tgtgacaaga 157  Q
    ||||||||||    
T  11099898 tgtgacaaga 11099889  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 11106414 - 11106351
Alignment:
Q  191 ttgtggtattttttgttgtgaataatgtctcagtactttttgtttatatagacatatttgatat 254  Q
    ||||||||||| |||||||||||||||||||  |||||||| |||||||||||  |||||||||    
T  11106414 ttgtggtatttcttgttgtgaataatgtctcgttactttttatttatatagaccaatttgatat 11106351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 11248295 - 11248396
Alignment:
Q  25 tccacatagggtgctaagttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagt 124  Q
    |||||| || ||||| ||||||  |||||| |||| ||||||| ||   || || ||||||||||||||||| |  ||||||||||||||||| ||||||    
T  11248295 tccacacagagtgcttagttcataaaccttcttcagtagacccctccacctattattgtatgttgctttcctagatgcatcattgacaatgaaagcaagt 11248394  T
Q  125 tt 126  Q
    ||    
T  11248395 tt 11248396  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 11099850 - 11099810
Alignment:
Q  203 ttgttgtgaataatgtctcagtactttttgtttatatagac 243  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  11099850 ttgttgtgaataatgtctcgttaatttttgtttatatagac 11099810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 13308281 - 13308146
Alignment:
Q  23 attccacatagggtgctaagttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaa 122  Q
    |||||||| || ||||| |||||  ||| ||| ||||||| ||||||| | ||||||||||||||| |||| |||||||| |||||||||||||||||||    
T  13308281 attccacaaagcgtgcttagttcgtcaatcttcttcaataaacccttcatccttttcttgtatgttacttttcttgcagcgtcattgacaatgaaggcaa 13308182  T
Q  123 gtttaacttttcttctagtcatggttgtgacaagaa 158  Q
    |||| || ||||||||||||||||||| ||| ||||    
T  13308181 gtttcacctttcttctagtcatggttgcgactagaa 13308146  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 19004697 - 19004836
Alignment:
Q  23 attccacatagggtgctaagttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaa 122  Q
    |||| ||| ||| |||| |||||  ||||||| ||||  |||||||||||  |||||||||||||| |||| |||||||||||||| ||| | ||  |||    
T  19004697 attctacaaaggatgcttagttcttcaaccttattcagcagacccttcttcgttttcttgtatgtttcttttcttgcagcatcatttacattaaattcaa 19004796  T
Q  123 gtttaacttttcttctagtcatggttgtgacaagaacaaa 162  Q
    |||| || ||| ||||||| |||||| |||||||||||||    
T  19004797 gttttaccttttttctagttatggttttgacaagaacaaa 19004836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 18950373 - 18950512
Alignment:
Q  23 attccacatagggtgctaagttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaa 122  Q
    |||| ||| ||| |||| |||||  ||||||| ||||| | |||||||||  |||||||||||||| |||| |||||||||||||| ||| | ||  |||    
T  18950373 attctacaaaggatgcttagttcttcaaccttattcaacatacccttcttcgttttcttgtatgtttcttttcttgcagcatcatttacattaaattcaa 18950472  T
Q  123 gtttaacttttcttctagtcatggttgtgacaagaacaaa 162  Q
    |||| || ||| ||||| | |||||| |||||||||||||    
T  18950473 gttttaccttttttctaattatggttttgacaagaacaaa 18950512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 18949816 - 18949680
Alignment:
Q  23 attccacatagggtgctaagttcagcaaccttt-ttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggca 121  Q
    |||||||| |||||||| |||||| ||| |||| ||||||| || |||||| ||||| ||||||||||||||  |   ||||||||| ||| |  ||| |    
T  18949816 attccacaaagggtgcttagttcatcaaactttattcaataaactcttcttcctttttttgtatgttgcttttatactagcatcatttacattagaggaa 18949717  T
Q  122 agtttaacttttcttctagtcatggttgtgacaagaa 158  Q
    ||||| || ||| ||||||||||| ||||||| ||||    
T  18949716 agtttcaccttttttctagtcatgattgtgactagaa 18949680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 19004140 - 19004004
Alignment:
Q  23 attccacatagggtgctaagttcagcaaccttt-ttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggca 121  Q
    |||||||| |||||||| |||||| ||| |||| ||||||| || |||||| ||||| ||||||||||||||  |   ||||||||| ||| |  ||| |    
T  19004140 attccacaaagggtgcttagttcatcaaactttattcaataaactcttcttcctttttttgtatgttgcttttatactagcatcatttacattagaggaa 19004041  T
Q  122 agtttaacttttcttctagtcatggttgtgacaagaa 158  Q
    ||||| || ||| ||||||||||| ||||||| ||||    
T  19004040 agtttcaccttttttctagtcatgattgtgactagaa 19004004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 15868052 - 15868122
Alignment:
Q  56 ttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagttt 126  Q
    |||||||||||||| || |||||||| ||||||||||||||| || ||| ||| ||| |||| | ||||||    
T  15868052 ttcaatagacccttattccttttcttttatgttgctttccttacaacattattcacattgaatgaaagttt 15868122  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 29358260 - 29358381
Alignment:
Q  26 ccacatagggtgctaagttcagcaacctttttcaatagacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagtt 125  Q
    ||||| |||||||| ||||||  ||||||||||| |||||| ||||| ||||||||| | || || ||||| || |  || ||||  ||||| || ||||    
T  29358260 ccacagagggtgctgagttcactaacctttttcattagacctttcttccttttcttgaacgtcgccttcctcgcggagtcgttgattatgaatgcgagtt 29358359  T
Q  126 taacttttcttctagtcatggt 147  Q
    | || ||| |||||||||||||    
T  29358360 tcaccttttttctagtcatggt 29358381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 27530690 - 27530754
Alignment:
Q  62 agacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagttt 126  Q
    |||| ||| |||||||| ||||| |||  ||||||||||| ||||||||| ||||| ||||||||    
T  27530690 agactcttttttcttttgttgtaagttattttccttgcagaatcattgaccatgaaagcaagttt 27530754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 27548346 - 27548410
Alignment:
Q  62 agacccttctttcttttcttgtatgttgctttccttgcagcatcattgacaatgaaggcaagttt 126  Q
    |||| ||| |||||||| ||||| |||  ||||||||||| ||||||||| ||||| ||||||||    
T  27548346 agactcttttttcttttgttgtaagttattttccttgcagaatcattgaccatgaatgcaagttt 27548410  T

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