View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_high_39 (Length: 237)
Name: NF16600_high_39
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 36168 - 35962
Alignment:
| Q |
15 |
ataatacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatgtgaaacctgtgaggttaacttttacatcagttacggtacaaacac |
114 |
Q |
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| T |
36168 |
ataatacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatgtgaaacctttgaggttaacttttacatcagttacggtacaaacac |
36069 |
T |
|
| Q |
115 |
caacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgttgtgaagaatcctttccataacacaaaccacgggaatcatact |
214 |
Q |
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| T |
36068 |
caacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgttgtgaagaatcctttccataacacaaaccacgggaatcatact |
35969 |
T |
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| Q |
215 |
caatttt |
221 |
Q |
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||||||| |
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| T |
35968 |
caatttt |
35962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 8676538 - 8676677
Alignment:
| Q |
72 |
aaacctgtgaggttaacttttacatcagttacggtacaaacaccaacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgt |
171 |
Q |
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|||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| || || | |||||||| |||||| |||| ||| |
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| T |
8676538 |
aaacctttgaagttaacatttacatcagttacggtgcaaacaccaacaccaataaccacaaccatgaccgacactttcacttcccttgagtagtgtttgc |
8676637 |
T |
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| Q |
172 |
tgtgaagaatcctttccataacacaaaccacgggaatcat |
211 |
Q |
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| T |
8676638 |
tgtgaaggatccattccatcacacaaaccaccggaatcat |
8676677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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