View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_high_41 (Length: 234)
Name: NF16600_high_41
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 111 - 229
Target Start/End: Original strand, 43356235 - 43356353
Alignment:
| Q |
111 |
ctgaatatcataaaaatatcatcaattatgctcaaggatcgtgggcacatggtatgcagaaatagaaatcccaatnnnnnnnggaaatagaaatagtgta |
210 |
Q |
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| T |
43356235 |
ctgaatatcataaaaatatcatcaattatgctcaaggatcgtgggcacatggtatgcagaaatagaaatcccaataaaaaaaggaaatagaaatagtgta |
43356334 |
T |
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| Q |
211 |
gctctgtctcccctatgct |
229 |
Q |
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| T |
43356335 |
gctctgtctcctctatgct |
43356353 |
T |
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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 43356178 - 43356247
Alignment:
| Q |
18 |
ggaaatagttctaacggataagtgatcactacttctaattgatcaaagtcaacaaaactgaatatcataa |
87 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43356178 |
ggaaatagttctaacggctaagtgatcactacttctaattgatcaaagtcaacaaaactgaatatcataa |
43356247 |
T |
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