View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_high_43 (Length: 217)
Name: NF16600_high_43
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 26963079 - 26963225
Alignment:
| Q |
16 |
ataagaaattaaggaaatcaatccttagagatcgatcacctttgttttaagatacaacaatattatattcatgagatatatccatatcattttaacattc |
115 |
Q |
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| T |
26963079 |
ataagaaattatggaaatcaatccttagatatc----acctttcttttaagatacgacaatattatattcatgagatatatccatatcattttaacattc |
26963174 |
T |
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| Q |
116 |
accaatcatcaaaataacatgaaatgaattctgtgccaataatattatccg |
166 |
Q |
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| T |
26963175 |
accagtcatcaaaataacatgaaatgaattatgtaccaataatattatccg |
26963225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 49 - 202
Target Start/End: Original strand, 26930160 - 26930310
Alignment:
| Q |
49 |
gatcacctttgttttaagatacaacaatattatattcatgagatatatccatatcattttaacattcaccaatcatcaaaataacatgaaatgaattctg |
148 |
Q |
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| T |
26930160 |
gatcacctttgttttaagatacgataatattaatttcatgagatatttccatatcattttaacattcaccaatcatcaaaataacaagatatgaa---tg |
26930256 |
T |
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| Q |
149 |
tgccaataatattatccgtacaattgtagcagccaaagataccgcaacataatt |
202 |
Q |
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| T |
26930257 |
tgccaaacatattctctgtacaattgtagcagccagagatgccccaacataatt |
26930310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 27564429 - 27564520
Alignment:
| Q |
52 |
cacctttgttttaagatacaacaatattatattcatgagatatatccatatcattttaacattcaccaatcatcaaaataacatgaaatgaa |
143 |
Q |
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| T |
27564429 |
cacctttgtcttaagatacgaaaatattaatttcatgagatatttccatattattctaacattaaccaatcatcaaaataacaagaaatgaa |
27564520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 29413651 - 29413773
Alignment:
| Q |
16 |
ataagaaattaaggaaatcaatccttagagatcgatcacctttgttttaagatacaacaatattatattcatgagatatatccatatcattttaacattc |
115 |
Q |
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||||| ||||| ||||||||||||| ||||||| ||||| |||| ||||||| | ||||||| |||||||||||| ||||||| ||| ||||||| |
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| T |
29413651 |
ataaggaattatggaaatcaatcctcagagatc----acctt-gtttcaagatacgaaaatattaatttcatgagatatttccatattattgtaacatta |
29413745 |
T |
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| Q |
116 |
accaatcatcaaaataacatgaaatgaa |
143 |
Q |
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| T |
29413746 |
accaatcatcgaaataacaagaaatgaa |
29413773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 24202353 - 24202301
Alignment:
| Q |
49 |
gatcacctttgttttaagatacaacaatattatattcatgagatatatccata |
101 |
Q |
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| T |
24202353 |
gatctcctttgttttaagatacgaaaatattaaattcatgagatatttccata |
24202301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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