View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_low_1 (Length: 816)
Name: NF16600_low_1
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 2751797 - 2752200
Alignment:
| Q |
20 |
tagtatgttattataatttggctgtagaacctttcattcaaaaccttgtaatcacaacctatacacggactccattcagacgtcattttgaagtttctgt |
119 |
Q |
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| T |
2751797 |
tagtatgttattataatatggctgtagaacctttcattcaaaaccttgtaatcacaacctatacacggactccattcagacgtcattttgaagtttctgt |
2751896 |
T |
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| Q |
120 |
ccatgtaataatcaaaatatcctcatttgaatgaatatttttattctgctaaccaagattaattctgctttcattatatttaagttgattcaaagttaat |
219 |
Q |
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| T |
2751897 |
ccatgtaataatcaaaatatcctcatttgaatgaatatttttattttgctaaccaagattaattctgctttcat--tatttaagttgattcaaagttaat |
2751994 |
T |
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| Q |
220 |
caagaggacatgtatgtgacttagccaacctgcttcatcaatccctcgttacctaattatttttggaagctttaaaaaggccttatatatggtctaaact |
319 |
Q |
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| T |
2751995 |
caagaggacatgtatgtgacttagccaactggcttcatc-atccctcgttacctaattatttttggaagctttaaaaaggccttgtatatggtctaaact |
2752093 |
T |
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| Q |
320 |
ggttcccagcctaggttcaactatagtttcttcctcaccgattatttattcataatttccaagtcagaaacttcgctcttcagctacccattcaggtttc |
419 |
Q |
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| T |
2752094 |
ggctcccagcctaggttcaactctagtttcttcctcaccgattatttattcataatttccaagtcagaaacttcgctcttcagctaccca-tcaggtttc |
2752192 |
T |
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| Q |
420 |
gagtatat |
427 |
Q |
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| T |
2752193 |
gagtatat |
2752200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 453 - 803
Target Start/End: Original strand, 2752199 - 2752554
Alignment:
| Q |
453 |
atcactccaaattcatttgcagccacattctttttgaaggatcacattccatcaacccacatattgtgtgttgaagtcattcctacttacttccacacca |
552 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2752199 |
atcactccaaattcatttgcagccacattctttttgaaggatcacattctatcaacccacatattgtgtgttgaagtcattcctactt----ccacacca |
2752294 |
T |
|
| Q |
553 |
caggactcttcctaactcagaaacactaattggttgagcaaccatggaagaatctaagccacttcctatttccttat-------------ctgctacact |
639 |
Q |
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| T |
2752295 |
caggactcttcctaactcagaaacactaattggttgagctaccttggcagaatctaagccacttcctatttcctaacttcttcccttctgctgctacact |
2752394 |
T |
|
| Q |
640 |
agactcaatcactcaacatgtgcaagagcttaccatcactcacacagaccaaatacaaaacaatatatagctacaaccactccaacagttactctaaact |
739 |
Q |
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| T |
2752395 |
agactcaatcactcaacatgtgcaagagcttaccatcactcacacagaccaaatacaaaacaata----gctacaaccactccaacagttactctaaact |
2752490 |
T |
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| Q |
740 |
tggtgtttcacgaatgaagttagttttattaataatttcatgtgtctctttaagttgacaattg |
803 |
Q |
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| T |
2752491 |
tggtgtttcacgaatgaagttagttttattaataatttcatgtgtctctttaagttgacaattg |
2752554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 2800434 - 2800491
Alignment:
| Q |
50 |
ctttcattcaaaaccttgtaatcacaacctatacacggactccattcagacgtcattt |
107 |
Q |
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|||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
2800434 |
ctttgattcaaaaccttgtaatcaagacctatatttggactccattcagacatcattt |
2800491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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