View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_low_10 (Length: 440)
Name: NF16600_low_10
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 5 - 424
Target Start/End: Complemental strand, 46098532 - 46098113
Alignment:
| Q |
5 |
agtgagaagaattttcaccattcagcctaaaattattttatttggtaatacttgattttgtaaatttgatttggttacgagtatatttgaagtaaaatga |
104 |
Q |
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| T |
46098532 |
agtgacaagaattttcaccattcagcctaaaattattttatttggtaatacttgattttgtaaatttgatttggttacgagtatatttgaagtaaaatga |
46098433 |
T |
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| Q |
105 |
cctatgtttgaatttcattcactcaaaccaaaagttatatggagttgctttacttctatcaaaaccacctttcaacccctaaactttgtttgaaaaaata |
204 |
Q |
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| T |
46098432 |
cctatgtttgaatttcatccactcaaaccaaaagttatatggagttgctttacttctatcaaaaccacctttcaacccctaaactttgtttgaaaaaata |
46098333 |
T |
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| Q |
205 |
atgtaactgtgcttgtaaacattttcaaaaatcacaaaagaacattttgagtcttgaagatgtgatttgggtccaaacatattgttagtcactcaagttc |
304 |
Q |
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| T |
46098332 |
atgtaactgtgcttgtaaacattttcaaaaatcacaaaagaacattttgagtcttgaagatgtgatttgggtccaaacatattgttagtcactcaagttc |
46098233 |
T |
|
| Q |
305 |
aaactggttaggagagaagtccaccctgccctaccaaacataaacatacaaaaactaactccttgaacagcataaacctgagatgacagggagcctcaca |
404 |
Q |
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| T |
46098232 |
aaactggttaggagagaagtccaccctgccctaccaaacataaacatacaaaaactaactccttgaacagcataaacctgagatgacagggagcctcaca |
46098133 |
T |
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| Q |
405 |
ctcacatcaggggcatatca |
424 |
Q |
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| T |
46098132 |
ctcacatcaggggcatatca |
46098113 |
T |
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Back To:
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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 11760828 - 11760760
Alignment:
| Q |
62 |
ttgtaaatttgatttggttacgagtatatttgaagtaaaatgacctatgtttgaatttcattcactcaa |
130 |
Q |
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| T |
11760828 |
ttgtaaatttgatttggttacgagtatatttgaagtaaaatgacctatgtttgaatttcatccactcaa |
11760760 |
T |
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