View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16600_low_12 (Length: 434)
Name: NF16600_low_12
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 1460125 - 1459708
Alignment:
| Q |
1 |
tcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatggaagaatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1460125 |
tcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatggaagaatct |
1460026 |
T |
|
| Q |
101 |
atggtgtctcgttccagctctcgaattcgtcggaaccaaaacggtgacggtaaccaaatacgttgtttcgcgacaagctgctgataatcattacatgcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1460025 |
atggtgtctcgttccagctctcgaatttgtcggaaccaaaacggtgacggtatccaaatacgttgtttcgcgacaagctgctggtaatcattacatgcat |
1459926 |
T |
|
| Q |
201 |
tattgggaaagaatataccctgaagttcctaatactatctttactagtgaaacccttgttattcttaagctcagtgaactttttatgggttctggatttt |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1459925 |
aattgggaaagaatataccctgaatttcctaatactatctttactagagaaacccttgttattcttaagctcagtgaactttttatgggttctgggtttt |
1459826 |
T |
|
| Q |
301 |
gtaattatctcataagattaccctcactcaaaaccctacatctgaaagtcattgagtttcatcaatatggagatcttgattgtcttctagagggatgtcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1459825 |
gtaattatctcataagattaccctcactcaaaaccctacatctgaaagacattgagtttcaacaatatggagatcttgattgtcttctagagggatgtcc |
1459726 |
T |
|
| Q |
401 |
agttcttgaagatcttca |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1459725 |
agttcttgaagatcttca |
1459708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 418
Target Start/End: Complemental strand, 1446494 - 1446305
Alignment:
| Q |
229 |
ctaatactatctttactagtgaaacccttgttattcttaagctcagtgaactttttatgggttctggattttgtaattatctcataagattaccctcact |
328 |
Q |
| |
|
|||||||||| ||||| || |||||||||| |||||||||||||| | |||| ||||||| | | ||||||| |||||| ||||| |||||| ||||| |
|
|
| T |
1446494 |
ctaatactattcttacttgtacaacccttgttgttcttaagctcagttatctttatatgggtccggcattttgttattatcccataatattaccttcact |
1446395 |
T |
|
| Q |
329 |
caaaaccctacatctgaaagtcattgagtttcatcaatatggagatcttgattgtcttctagagggatgtccagttcttgaagatcttca |
418 |
Q |
| |
|
||||||||||||| |||||| |||| ||||| ||| ||||||||||||| | |||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
1446394 |
caaaaccctacatttgaaagacattaagtttgatcgatatggagatcttaagtgtcttctagggtattgtccagttattgaagatcttca |
1446305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 1446774 - 1446672
Alignment:
| Q |
3 |
agcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatggaagaatctat |
102 |
Q |
| |
|
|||| ||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||| |
|
|
| T |
1446774 |
agcagtttaccagacgatatcctaattcaaattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagatggaagcatctat |
1446675 |
T |
|
| Q |
103 |
ggt |
105 |
Q |
| |
|
||| |
|
|
| T |
1446674 |
ggt |
1446672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 12094090 - 12094206
Alignment:
| Q |
1 |
tcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatggaagaatct |
100 |
Q |
| |
|
|||||| ||||||||| |||||||| |||||||||| ||| || |||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
12094090 |
tcagcaatttaccagacgatatcctgattcacattctgtcttcttttcccaccaaacaagcctttgtcacttcaattctttcaaagagatggaagcatct |
12094189 |
T |
|
| Q |
101 |
atggtgtctcgttccag |
117 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
12094190 |
atggtgttacgttccag |
12094206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 12104430 - 12104530
Alignment:
| Q |
1 |
tcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatggaagaatct |
100 |
Q |
| |
|
|||||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||||||||||| |||| |
|
|
| T |
12104430 |
tcagcaatttatcagacgatatcctgattcacattctctcttttcttcccaccaaacaagcctttctcacttcaattctttcaaagagatggaagcatct |
12104529 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
12104530 |
a |
12104530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 409155 - 409234
Alignment:
| Q |
28 |
ttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatggaagaatctatggtgt |
107 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
409155 |
ttcacattctctcttttgttcccaccaaacaagcctttgtcacatccattctttcaaagagatggactcatctatggtgt |
409234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 820437 - 820515
Alignment:
| Q |
15 |
gatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatgga |
93 |
Q |
| |
|
||||||||||| |||| ||||||||| || |||| ||||||||||||||||| |||||| ||||||||||| |||||| |
|
|
| T |
820437 |
gatgatatcctgattcatattctctcttctgttcctaccaaacaagcctttgtcacttccattctttcaaagcgatgga |
820515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 997556 - 997449
Alignment:
| Q |
8 |
tttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatggaagaatctatggtgt |
107 |
Q |
| |
|
|||||| || || |||||| | |||||||||||| | ||||||||||||||||||| | |||||| ||||||||||| |||||| ||||||| ||| |
|
|
| T |
997556 |
tttaccggacgagatcctaatccacattctctcttttgttcccaccaaacaagccttcgcaacttccattctttcaaagcgatggattaatctatagtgc |
997457 |
T |
|
| Q |
108 |
ctcgttcc |
115 |
Q |
| |
|
| |||||| |
|
|
| T |
997456 |
cacgttcc |
997449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 418
Target Start/End: Complemental strand, 975166 - 975132
Alignment:
| Q |
384 |
cttctagagggatgtccagttcttgaagatcttca |
418 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
975166 |
cttctagatggatgtccagttcttgaagatcttca |
975132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 975683 - 975622
Alignment:
| Q |
32 |
cattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatgga |
93 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| ||| |||||| ||||||||||| |||||| |
|
|
| T |
975683 |
cattctctcttctcttcccattgaacaagcctgtgtcacttccattctttcaaagcgatgga |
975622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University