View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_low_13 (Length: 424)
Name: NF16600_low_13
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 33387647 - 33388044
Alignment:
| Q |
19 |
atatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagataacccactcgggcttgtggtccaggcaatttgatggatgcaatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33387647 |
atatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagataacccactcgggcttggggtccaggcaatttgatggatgcaatt |
33387746 |
T |
|
| Q |
119 |
gtaccatctggttatctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387747 |
gtaccatctggttatctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgac |
33387846 |
T |
|
| Q |
219 |
atagtagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387847 |
atagtagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagc |
33387946 |
T |
|
| Q |
319 |
gccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatgtccatc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33387947 |
gccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatc |
33388044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 416
Target Start/End: Complemental strand, 20817453 - 20817060
Alignment:
| Q |
26 |
tcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagataacccactcgggcttgtggtccaggcaatttgatggatgcaattgtaccat |
125 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||| |
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| T |
20817453 |
tcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatttgatggatgcaagtatacttc |
20817354 |
T |
|
| Q |
126 |
ctggttatctttcactgtcaagtagtgtcctgtccgct---caagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatag |
222 |
Q |
| |
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||| || ||||| |||||||||||| ||||| || ||| ||| |||||||||||||||||| |||||||||||||||| |||| | |||||||| ||| |
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| T |
20817353 |
ctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgagccacctgcatgaaatatcctgctagcattgtctttcttatgttgacgtag |
20817254 |
T |
|
| Q |
223 |
tagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagcgccc |
322 |
Q |
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|||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
20817253 |
tagtggcgactattgaagtcagtgctgcataacttcagattaaaccgagccatgatacgcactagctgttgtcgaacattatcagctgatttcaacaccc |
20817154 |
T |
|
| Q |
323 |
tgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatgtccatc |
416 |
Q |
| |
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| | ||||| |||||| || ||||||||||| | |||||| |||||||||||||||||||| ||||| ||||| ||||||||||||| |||||| |
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|
| T |
20817153 |
tataattaataaagttgtcgtagcaccaagaagcatcctcgttgttttgcttgtaggcatgatatacattcaagagtgtgagatgatctccatc |
20817060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 126 - 362
Target Start/End: Original strand, 38778277 - 38778513
Alignment:
| Q |
126 |
ctggttatctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtag |
225 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||||| |||||| |
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| T |
38778277 |
ctggttgtctttaactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaaatatcctgctaacattgcctttcttatgttgacgtagtag |
38778376 |
T |
|
| Q |
226 |
tcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgt |
325 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
38778377 |
tcgcgactattgaagtcagtgctgcataacttcaggttaaacctagccatgatacgcactagctgttgtcgaacattatcagctgatttaagcgccctat |
38778476 |
T |
|
| Q |
326 |
gattaacaaagttttcatagcaccaagatggatcctc |
362 |
Q |
| |
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|||||| ||||| || ||||||||||| | |||||| |
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| T |
38778477 |
tattaacgaagttgtcgtagcaccaagaagcatcctc |
38778513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 38778059 - 38778164
Alignment:
| Q |
19 |
atatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagataacccactcgggcttgtggtccaggcaatttgatggatgcaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
38778059 |
atatctgtcacagtacgtatgaaattccgactcgtaagaacatattcattgtagataacccactcgggcttgtggtccagacaatttgatggatgcaagt |
38778158 |
T |
|
| Q |
119 |
gtacca |
124 |
Q |
| |
|
|||||| |
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|
| T |
38778159 |
gtacca |
38778164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 416
Target Start/End: Original strand, 38778622 - 38778673
Alignment:
| Q |
365 |
tgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatgtccatc |
416 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
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| T |
38778622 |
tgttttgcttgtaggcatggtatacattcaagagtgtgagatgatctccatc |
38778673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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