View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_low_15 (Length: 407)
Name: NF16600_low_15
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 979617 - 979990
Alignment:
| Q |
18 |
atgaagagggaaaatgttctctgaaagaaaaatgaagacaaacccaacactataatttactnnnnnnnnnttagagatgaatggagtacctggaagacca |
117 |
Q |
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| T |
979617 |
atgaagagggaaaatgttctctgaaagaaaaatgaagacaaacccaacactataatttactaaaaaaaa-ttagagatgaatggagtaccttgaagacca |
979715 |
T |
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| Q |
118 |
aatagccactacaaatttttcaaaacagaactccaaaaactggcgacaatgatttctcatgaacactgaaaaaacaacaccagattagtaaagagaataa |
217 |
Q |
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| T |
979716 |
aatagccactacaattttttcaaaacagaactccaaaaactggtgacaatgatttctcatgaacactaaaaaaacaacaccaaattagtaaagagaataa |
979815 |
T |
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| Q |
218 |
gctcattagagatgatgggcagaaagtaaaaagaatcaatcacatccacgattttacaattattgatggcgattccacccgattccaccatcttccgatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
979816 |
tctcattagagatgatgggcagaaagtaaaaagaatcaatcacttccacgattttacaattattgatggcgattccacccgattccaccatcttccgatt |
979915 |
T |
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| Q |
318 |
atgcttatcaccaaaatcgttgagggccagcataattgtaaaatcgtacgtttttacgcttttaatcgtgatttt |
392 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
979916 |
atgcttatcaccaaaatcgttaagggccagcataattgtaaaatcgtacgtttttatgcttttaattgtgatttt |
979990 |
T |
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