View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_low_20 (Length: 394)
Name: NF16600_low_20
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 2988503 - 2988883
Alignment:
| Q |
17 |
agttacatgtgttattcttaacttttgcattgtgaaatcatatgaattatatcttttaatttaagtatgcctcttaatgttcaattggcttcttgcagag |
116 |
Q |
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| T |
2988503 |
agttacatgtgttattcttaacttttgcattgtggaatcatatgaattatatcttttaatttaagtatgcctcttaatgttcaattggcttcttgcagag |
2988602 |
T |
|
| Q |
117 |
agcatcaagtggtggatcaaatggagc-aacattaagcaaaagtgaggatttcaaactaggaggcgaatatctt----ttgcagataactattgccaaca |
211 |
Q |
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| T |
2988603 |
agcatcaagtggtggatcaaatggagcaaacattaagcaaaagcgaggatttcaaacgaggaggtggatatctttcacttggagataactattgccaaca |
2988702 |
T |
|
| Q |
212 |
tgaagttgtgatactgtttgctcttaggaaaaatatg---------tttttaatttcattttatcatcctaatatccaatttcgatatggaactgtggtg |
302 |
Q |
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| T |
2988703 |
tgaagttgtgatactgttagcccttaggaaaaatatgctttttttttttttaatttctttttatcatcctaatatccaatttcgatatggaactgtggtg |
2988802 |
T |
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| Q |
303 |
ctcgtttgctattgaaacttataattgtttattttaaaatacctaatgatcatatgtactcagacccgtttattgagaatt |
383 |
Q |
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| T |
2988803 |
cttgtttgctattgaaacttataattgtttattttgaaatacctagtgatcatatgtactcagacccgtttattgagaatt |
2988883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 3292248 - 3292371
Alignment:
| Q |
17 |
agttacatgtgttattcttaacttttgcattgtgaaatcatatgaattatatcttttaatttaagtatgcctcttaatgttcaattggcttcttgcagag |
116 |
Q |
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| T |
3292248 |
agttacatatgttatgctaaacttttgcattgggtaatcatatgatctatctcttgcaattttactatgcctcctaatgtttagttgacttcttgaagag |
3292347 |
T |
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| Q |
117 |
agcatcaagtggtggatcaaatgg |
140 |
Q |
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| || | |||||||||||||||| |
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| T |
3292348 |
accactaggtggtggatcaaatgg |
3292371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 3125404 - 3125292
Alignment:
| Q |
28 |
ttattcttaacttttgcattgtgaaatcatatgaattatatcttttaatttaagtatgcctcttaatgttcaattggcttcttgcagagagcatcaagtg |
127 |
Q |
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| T |
3125404 |
ttatgcttaacttttacattgtgtaatcatatgatctatctcttgcaatttgattatgcctcctaatatttagttggcttcttgctgagaccaccagatg |
3125305 |
T |
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| Q |
128 |
gtggatcaaatgg |
140 |
Q |
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| T |
3125304 |
gtggatcaaatgg |
3125292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 38263044 - 38263138
Alignment:
| Q |
19 |
ttacatgtgttattcttaacttttgcattgtgaaatcatatgaattatatcttttaatttaagtatgcctcttaatgttcaattggcttcttgcag |
114 |
Q |
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| T |
38263044 |
ttacatatgttatgcttaacttttgcattgtagaatcatatgaactatttcttgtaatttgactatgtcttttaatgtt-aattgccttcttgcag |
38263138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 38205946 - 38205850
Alignment:
| Q |
19 |
ttacatgtgttattcttaacttttgcattgtgaaatcatatgaattatatcttttaatttaagtatgcctcttaatgttcaattggcttcttgcaga |
115 |
Q |
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|||||| |||||| |||||||| |||||||| |||||||||||| ||| |||| ||||| | ||||| | ||||| || ||||| ||| ||||||| |
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| T |
38205946 |
ttacatatgttatgcttaacttatgcattgtaaaatcatatgaaatatctcttgcaatttgattatgcattttaatatttaattgactttttgcaga |
38205850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 341
Target Start/End: Original strand, 38263282 - 38263374
Alignment:
| Q |
249 |
tttttaatttcattttatcatcctaatatccaatttcgatatggaactgtggtgctcgtttgctattgaaacttataattgtttattttaaaa |
341 |
Q |
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||||| |||||||||||||||| |||| | ||| || ||| ||||||||| ||| |||| ||| |||||||||||| |||||||||||| |
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| T |
38263282 |
ttttttatttcattttatcatcataattttcaactttgatttggaactgtaatgcatgttttctaccgaaacttataatgttttattttaaaa |
38263374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 12413852 - 12413746
Alignment:
| Q |
17 |
agttacatgtgttattcttaacttttgcattgtgaaatcatatgaattatatcttttaatttaagtatgcctcttaatgttcaattggcttcttgcagag |
116 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| || |||||||| || ||| |||| ||||| | |||||||| |||| || |||| ||||||| |||| |
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| T |
12413852 |
agttacatatgttattcttaactttcgcattatggaatcatataaactatctcttgcaatttgattatgcctcctaatttttaattatcttcttgtagag |
12413753 |
T |
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| Q |
117 |
agcatca |
123 |
Q |
| |
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||||||| |
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| T |
12413752 |
agcatca |
12413746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 18780045 - 18780100
Alignment:
| Q |
198 |
aactattgccaacatgaagttgtgatactgtttgctcttaggaaaaatatgttttt |
253 |
Q |
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|||| ||| |||||||||||||||||| ||||||||| ||||| ||||| |||||| |
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| T |
18780045 |
aacttttgtcaacatgaagttgtgatattgtttgctcctaggagaaatacgttttt |
18780100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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