View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16600_low_21 (Length: 387)

Name: NF16600_low_21
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16600_low_21
NF16600_low_21
[»] chr7 (1 HSPs)
chr7 (75-365)||(48286251-48286541)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 75 - 365
Target Start/End: Original strand, 48286251 - 48286541
Alignment:
Q  75 acacaaaatcacaatgcagcaaccatcgcccgaacaaaaaccaataatactaccaaaaccaccttgttatagagacccaaacatccaacaaaaaccgctt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48286251 acacaaaatcacaatgcagcaaccatcgcccgaacaaaaaccaataatactaccaaaaccaccttgttatagagacccaaacatccaacaaaaaccgctt 48286350  T
Q  175 ccaacacgaaacccttctctcccaccttctttccgaccaaaacccaagaaacgtaattattgtcgcctatgttgttgcacattttgcatcatcttcctca 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48286351 ccaacacgaaacccttctctcccaccttctttccgaccaaaacccaagaaacgtaattattgtcgcctattttgttgcacattttgcatcatcttcctca 48286450  T
Q  275 ttctcttcttccttttcatcctcgccgccgcagttatctacattctctatcaaccttccataccagaattccacctcggttccttccgtgt 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  48286451 ttctcttcttccttttcatcctcgccgccgcagttatctacattctctaccaaccttccataccagaattccacctcggttctttccgtgt 48286541  T

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