View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16600_low_25 (Length: 365)

Name: NF16600_low_25
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16600_low_25
NF16600_low_25
[»] chr6 (11 HSPs)
chr6 (14-349)||(30955204-30955539)
chr6 (14-348)||(30944944-30945278)
chr6 (14-254)||(31145397-31145637)
chr6 (14-254)||(31171710-31171950)
chr6 (36-254)||(31189455-31189673)
chr6 (36-253)||(31224476-31224693)
chr6 (36-268)||(30992453-30992685)
chr6 (14-268)||(30960949-30961203)
chr6 (14-254)||(31201262-31201502)
chr6 (14-254)||(31214185-31214425)
chr6 (39-254)||(31229759-31229974)
[»] chr7 (9 HSPs)
chr7 (34-112)||(31618457-31618535)
chr7 (36-109)||(31438982-31439055)
chr7 (36-112)||(31541209-31541285)
chr7 (46-118)||(31585591-31585663)
chr7 (40-115)||(31608444-31608519)
chr7 (34-112)||(31572804-31572881)
chr7 (159-247)||(31576052-31576140)
chr7 (207-247)||(31585462-31585502)
chr7 (159-247)||(31604718-31604806)
[»] chr1 (9 HSPs)
chr1 (40-121)||(9233930-9234011)
chr1 (201-268)||(49215559-49215626)
chr1 (36-118)||(49725148-49725230)
chr1 (36-118)||(49728570-49728652)
chr1 (40-121)||(9384383-9384464)
chr1 (231-268)||(49714567-49714604)
chr1 (223-271)||(9495608-9495656)
chr1 (40-112)||(11011057-11011129)
chr1 (200-268)||(49683286-49683354)
[»] chr4 (1 HSPs)
chr4 (36-115)||(15063329-15063408)
[»] chr8 (1 HSPs)
chr8 (34-115)||(44035640-44035721)


Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 349
Target Start/End: Original strand, 30955204 - 30955539
Alignment:
Q  14 gcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggactt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955204 gcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggactt 30955303  T
Q  114 gcaaagctctgtctcgagaaagagagcactatattcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955304 gcaaagctctgtctcgagaaagagagcactatattcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggag 30955403  T
Q  214 gagtttcacacaagtctgatgtttatagttatggaatgatgcttttagagatggtcggagtgagaaacaatattgatgttaacacaaatcaaactagcga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  30955404 gagtttcacacaagtctgatgtttatagttatggaatgatgcttttagagatggttggagtgagaaacaatattgatgttaatacaaatcaaactagcga 30955503  T
Q  314 gtattttccagattggatatacaataagctagaaaa 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  30955504 gtattttccagattggatatacaataagctagaaaa 30955539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 348
Target Start/End: Original strand, 30944944 - 30945278
Alignment:
Q  14 gcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggactt 113  Q
    ||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30944944 gcatagggggtgtaatatccggattttacattttgacataaaaccgcataacattcttttagatgaaaatttatgtccaaagatttcagattttggactt 30945043  T
Q  114 gcaaagctctgtctcgagaaagagagcactatattcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggag 213  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945044 gcaaagctctgtctcaagaaagagagcactattttcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggag 30945143  T
Q  214 gagtttcacacaagtctgatgtttatagttatggaatgatgcttttagagatggtcggagtgagaaacaatattgatgttaacacaaatcaaactagcga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  30945144 gagtttcacacaagtctgatgtttatagttatggaatgatgcttttagagatggtgggagtgagaaacaatattgatgttaaaacaaatcaaactagcga 30945243  T
Q  314 gtattttccagattggatatacaataagctagaaa 348  Q
    |||||||||||||||||||||||||||||||||||    
T  30945244 gtattttccagattggatatacaataagctagaaa 30945278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 31145637 - 31145397
Alignment:
Q  14 gcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggactt 113  Q
    |||||| |||||||  || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31145637 gcatagaggatgtaccactcgaattttacattttgacataaaaccacataacattcttttagatgaaaacttatgtccaaagatttcagattttggactt 31145538  T
Q  114 gcaaagctctgtctcgagaaagagagcactatattcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggag 213  Q
    ||||| |||||||   |  ||||||||| ||| |  |||||| ||  |||||| ||| | |||||||||||||||||||| ||||||||||| |||||||    
T  31145537 gcaaaactctgtccaaaacaagagagcattatttcaatgtcagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggag 31145438  T
Q  214 gagtttcacacaagtctgatgtttatagttatggaatgatg 254  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31145437 gagtttcacacaaatctgatgtttatagttatggaatgatg 31145397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 31171950 - 31171710
Alignment:
Q  14 gcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggactt 113  Q
    |||||| |||||||  || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31171950 gcatagaggatgtaccactcgaattttacattttgacataaaaccacataacattcttttagatgaaaacttatgtccaaagatttcagattttggactt 31171851  T
Q  114 gcaaagctctgtctcgagaaagagagcactatattcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggag 213  Q
    ||||| |||||||   |  ||||||||| ||| |  |||||| ||  |||||| ||| | |||||||||||||||||||| ||||||||||| |||||||    
T  31171850 gcaaaactctgtccaaaacaagagagcattatttcaatgtcagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggag 31171751  T
Q  214 gagtttcacacaagtctgatgtttatagttatggaatgatg 254  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31171750 gagtttcacacaaatctgatgtttatagttatggaatgatg 31171710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 36 - 254
Target Start/End: Complemental strand, 31189673 - 31189455
Alignment:
Q  36 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtctcgagaaag 135  Q
    ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||   | ||||    
T  31189673 attttacatttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccaaaaaaag 31189574  T
Q  136 agagcactatattcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgt 235  Q
    |||||| ||| |  ||| || ||  |||||| ||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  31189573 agagcattatttcgatgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgt 31189474  T
Q  236 ttatagttatggaatgatg 254  Q
    |||||||||||||||||||    
T  31189473 ttatagttatggaatgatg 31189455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 36 - 253
Target Start/End: Original strand, 31224476 - 31224693
Alignment:
Q  36 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtctcgagaaag 135  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||  |||||    
T  31224476 attttacattttgacataaaaccacacaacatccttttagatgataatttatgtccgaagatttcagattttggacttgcaaaactatgtctcaggaaag 31224575  T
Q  136 agagcactatattcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgt 235  Q
    | |||| | | |  |||||| ||  |||||||||| | || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  31224576 aaagcattgtttcaatgtcagatcaaagaggaacaatggggtatgtagctccagaagtgtggaatagacattttggaggagtttcacacaagtctgatgt 31224675  T
Q  236 ttatagttatggaatgat 253  Q
    ||||||||||||||||||    
T  31224676 ttatagttatggaatgat 31224693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 36 - 268
Target Start/End: Original strand, 30992453 - 30992685
Alignment:
Q  36 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtctcgagaaag 135  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| || ||  ||||||    
T  30992453 attttacattttgacataaaaccacataacattcttttagatgagaatttttgtccaaagatctcagattttggactggcaaagctttgcctgaagaaag 30992552  T
Q  136 agagcactatattcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgt 235  Q
    | |||| | | |  |||||  ||  |||||| ||| | || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  30992553 acagcattgtttcgatgtcggatcaaagagggacaatggggtatgtagctccagaagtgtggaatagacattttggaggagtttcacacaagtctgatgt 30992652  T
Q  236 ttatagttatggaatgatgcttttagagatggt 268  Q
    ||||||||||||||||||| | ||||| |||||    
T  30992653 ttatagttatggaatgatgttgttagaaatggt 30992685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 30960949 - 30961203
Alignment:
Q  14 gcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggactt 113  Q
    |||||| ||||||  ||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||     
T  30960949 gcatagaggatgtgctactcgaattttacattttgacataaaaccacataacattcttttagatgagaatttttgtccaaagatctcagattttggactg 30961048  T
Q  114 gcaaagctctgtctcgagaaagagagcactatattcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggag 213  Q
    |||||||| || ||  ||||||| |||| | | |  |||||  ||  |||||| ||| | || ||||||||||| ||||| ||||||||||| |||||||    
T  30961049 gcaaagctttgcctgaagaaagacagcattgtttcgatgtcggatcaaagagggacaatggggtatgtagctcctgaagtgtggaatagacattttggag 30961148  T
Q  214 gagtttcacacaagtctgatgtttatagttatggaatgatgcttttagagatggt 268  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  30961149 gagtttcacacaagtctgatgtttatagttatggaatgatgttgttagaaatggt 30961203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 31201502 - 31201262
Alignment:
Q  14 gcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggactt 113  Q
    |||||| |||||||  || || ||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  31201502 gcatagaggatgtaccactcgaattttacatttcgacataaaaccacataatattcttttagatgagaatttttgtccaaagatttcagattttggactt 31201403  T
Q  114 gcaaagctctgtctcgagaaagagagcactatattcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggag 213  Q
    ||||| || ||||    ||| ||||||| ||| |  |||||| ||  |||||| ||  | |||||||||||||||||| | ||||||||||| |||||||    
T  31201402 gcaaaactttgtccaaggaacgagagcattatttcgatgtcagatcaaagagggactatgggatatgtagctccagaaatgtggaatagacattttggag 31201303  T
Q  214 gagtttcacacaagtctgatgtttatagttatggaatgatg 254  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  31201302 gagtttcatacaagtccgatgtttatagttatggaatgatg 31201262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 31214185 - 31214425
Alignment:
Q  14 gcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggactt 113  Q
    |||||| ||||| | ||| || ||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||| |||||||||||||||    
T  31214185 gcatagaggatgcagtactcgaattttacattttgatataaaaccacataatattttattagatgaaaatttttgtccaaagatatcagattttggactt 31214284  T
Q  114 gcaaagctctgtctcgagaaagagagcactatattcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggag 213  Q
    ||||  || |||||| ||||||| |||| ||| |  ||||||  ||| ||||||||  | |||||||||||||| ||  | ||||||||| | |||||||    
T  31214285 gcaagactttgtctcaagaaagaaagcattatttcgatgtcaggtgctagaggaacgatgggatatgtagctcctgagttgtggaatagaaactttggag 31214384  T
Q  214 gagtttcacacaagtctgatgtttatagttatggaatgatg 254  Q
    | |||||  |||||||||||||||||||||| |||||||||    
T  31214385 gcgtttcgtacaagtctgatgtttatagttacggaatgatg 31214425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 39 - 254
Target Start/End: Original strand, 31229759 - 31229974
Alignment:
Q  39 ttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtctcgagaaagaga 138  Q
    ||||||||||| || |||||||||||||| || ||| |||| ||||| ||||||||||| ||||||||||||||| |||  || || |   |||||||||    
T  31229759 ttacattttgacatcaaaccacataacatcctcttatatgagaatttttgtccaaagatatcagattttggactttcaagactttgccataagaaagaga 31229858  T
Q  139 gcactatattcatgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgttta 238  Q
    ||| ||| |  |||||| | || ||||| ||| | || ||||||||||| ||  ||||||||| | | |||||| ||||||| ||||||||||| |||||    
T  31229859 gcattatttctatgtcagacgctagagggacaatggggtatgtagctcctgagttatggaatataaattttggatgagtttcgcacaagtctgacgttta 31229958  T
Q  239 tagttatggaatgatg 254  Q
    ||||||||||||||||    
T  31229959 tagttatggaatgatg 31229974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 31618535 - 31618457
Alignment:
Q  34 ggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggact 112  Q
    ||||| ||||| ||||||||||||| || ||||||||||| |||||| |||| |||||||| || ||||||||||||||    
T  31618535 ggattctacatcttgatataaaacctcaaaacattcttttggatgaagatttttgtccaaaaatctcagattttggact 31618457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 31438982 - 31439055
Alignment:
Q  36 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttgg 109  Q
    ||||| ||| ||||||| ||||| || |||||||||||||||||| |||| |||||||| || || ||||||||    
T  31438982 attttgcatcttgatatcaaacctcaaaacattcttttagatgaagatttttgtccaaaaatatctgattttgg 31439055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 31541285 - 31541209
Alignment:
Q  36 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggact 112  Q
    ||||| ||| ||||||| |||||||| ||||||||||| ||||||||||| || || || || || |||||||||||    
T  31541285 attttgcatcttgatatcaaaccacaaaacattcttttggatgaaaatttttgccccaaaatctctgattttggact 31541209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 31585663 - 31585591
Alignment:
Q  46 ttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaa 118  Q
    ||||||| ||||| || ||||||||||| |||||| |||| |||||||| || || ||||||||||| |||||    
T  31585663 ttgatatcaaaccccaaaacattcttttggatgaagatttttgtccaaaaatatctgattttggactagcaaa 31585591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 31608519 - 31608444
Alignment:
Q  40 tacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgc 115  Q
    ||||| ||||||| ||||| || ||||||||||| |||||| | || |||||||| || || ||||||||||||||    
T  31608519 tacatcttgatatcaaacctcaaaacattcttttggatgaagacttttgtccaaaaatatctgattttggacttgc 31608444  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 31572804 - 31572881
Alignment:
Q  34 ggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggact 112  Q
    ||||||| ||| ||||||||||||| || ||||||||||| |||||| |||| || ||||| || || |||||||||||    
T  31572804 ggattttgcatcttgatataaaacc-caaaacattcttttggatgaagatttttgcccaaaaatctctgattttggact 31572881  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 31576140 - 31576052
Alignment:
Q  159 gcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgtttatagttatgg 247  Q
    |||||||||||| | |||||| | || ||||||| ||  ||||||  |||||| ||||||||  |||| |||||||| |||||||||||    
T  31576140 gcaagaggaacaataggatatatggcaccagaagcatttaatagatcatttggtggagtttcttacaaatctgatgtatatagttatgg 31576052  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 31585502 - 31585462
Alignment:
Q  207 tttggaggagtttcacacaagtctgatgtttatagttatgg 247  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  31585502 tttggtggagtttctcacaagtctgatgtgtatagttatgg 31585462  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 31604806 - 31604718
Alignment:
Q  159 gcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgtttatagttatgg 247  Q
    |||||||||||| | |||||| | || ||||||| ||  ||||||  |||||| ||||||||  |||| |||||||| |||||||||||    
T  31604806 gcaagaggaacaataggatatatggcaccagaagcatttaatagatcatttggtggagtttcttacaaatctgatgtatatagttatgg 31604718  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 9233930 - 9234011
Alignment:
Q  40 tacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagct 121  Q
    ||||||||||||| || || ||||| |||||| |||| ||| ||||   ||||||| |||| ||||||||||||||||||||    
T  9233930 tacattttgatatcaagcctcataatattcttctagacgaagatttcgttccaaaggtttcggattttggacttgcaaagct 9234011  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 49215559 - 49215626
Alignment:
Q  201 agacaatttggaggagtttcacacaagtctgatgtttatagttatggaatgatgcttttagagatggt 268  Q
    ||||| ||||| || || ||||| || || |||||||||||||||||||||||| ||||||| |||||    
T  49215559 agacattttggtggggtgtcacataaatcagatgtttatagttatggaatgatggttttagaaatggt 49215626  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 49725148 - 49725230
Alignment:
Q  36 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaa 118  Q
    ||||| |||||||| |||||||| |||||||||||||| ||||| |||||    || |  ||||| |||||||||||||||||    
T  49725148 attttgcattttgacataaaacctcataacattcttttggatgagaatttcaaccccagaatttcggattttggacttgcaaa 49725230  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 49728570 - 49728652
Alignment:
Q  36 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaa 118  Q
    ||||||||||||||||||||||| ||||| ||  |  |||| ||  |||| ||||| ||| |||| |||||||||||||||||    
T  49728570 attttacattttgatataaaacctcataatatattgctagacgatgatttttgtcctaaggtttcggattttggacttgcaaa 49728652  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 9384464 - 9384383
Alignment:
Q  40 tacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagct 121  Q
    ||||||||||||| || || ||||| |||||| |||| ||| | ||   ||||||| |||| ||||||||||||||||||||    
T  9384464 tacattttgatatcaagcctcataatattcttctagacgaagagtttgttccaaaggtttcggattttggacttgcaaagct 9384383  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 49714567 - 49714604
Alignment:
Q  231 gatgtttatagttatggaatgatgcttttagagatggt 268  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  49714567 gatgtttatagttatggaatgatggttttagaaatggt 49714604  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 9495608 - 9495656
Alignment:
Q  223 acaagtctgatgtttatagttatggaatgatgcttttagagatggtcgg 271  Q
    ||||||||||||||||||||| ||||||| || |  |||||||||||||    
T  9495608 acaagtctgatgtttatagttttggaatgttgttgctagagatggtcgg 9495656  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 11011129 - 11011057
Alignment:
Q  40 tacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggact 112  Q
    |||| ||||||||||| || |||||||||||| | |||||||||||   ||||||  |||| |||||||||||    
T  11011129 tacactttgatataaagcctcataacattcttcttgatgaaaatttcaatccaaaagtttctgattttggact 11011057  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 49683286 - 49683354
Alignment:
Q  200 tagacaatttggaggagtttcacacaagtctgatgtttatagttatggaatgatgcttttagagatggt 268  Q
    |||||| ||||| || || |||||||| || ||||| || ||||||||||||||| ||||||| |||||    
T  49683286 tagacattttggtggggtgtcacacaaatcagatgtctacagttatggaatgatggttttagaaatggt 49683354  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 15063329 - 15063408
Alignment:
Q  36 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgc 115  Q
    ||||| ||| ||||||| ||||| || |||||||||||||||||| |||| || ||||| || || |||||||| |||||    
T  15063329 attttgcatcttgatatcaaacctcaaaacattcttttagatgaagatttttgcccaaaaatatctgattttggtcttgc 15063408  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 44035640 - 44035721
Alignment:
Q  34 ggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgc 115  Q
    ||||||| ||||| || || |||||||||||||||||||| || |||| ||   |||| ||||| || ||||||||||||||    
T  44035640 ggatttttcatttcgacattaaaccacataacattcttttggacgaaacttaccgtcccaagatatctgattttggacttgc 44035721  T

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