View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_low_28 (Length: 326)
Name: NF16600_low_28
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 35409158 - 35409451
Alignment:
| Q |
15 |
aattggaccagcctgagaggaaaatctaatagaaaatgttgttccatggaccatggtctaaacttcctccaacaatgcaaatcagatttcttctgttaca |
114 |
Q |
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| T |
35409158 |
aattggaccagcctgagaggaaaatctaatagaaaatgttgttccat-------ggtctaaacttcctccaacaatgcaaatcagatttcttctgttaca |
35409250 |
T |
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| Q |
115 |
gagcttcaaatttaattacttttaagaaaagaccagcctgagatgcttgtggcgtgaatgtagataacttccttgccttagggctactgcagtccctcct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35409251 |
gagcttcaaatttaattacttttaagaaaagaccagcctgagatgcttgtggcgtgaatgtagataacttccttgccttagggccactgcagtccctcct |
35409350 |
T |
|
| Q |
215 |
ttcttgctatgtgttttttatatagcccttaagagatatgattgatgttgaagtattctgcccattatatgcatggctgaccttgtacatccttaagtat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35409351 |
ttcttgctatgtgttttttatatagcccttaagagatatgattgatgttgaagtattctgcccattatatgcatggctgaccttgtacatccttaattat |
35409450 |
T |
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