View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_low_29 (Length: 325)
Name: NF16600_low_29
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_29 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 39718853 - 39718547
Alignment:
| Q |
19 |
cgtagaacactgaacacgtttttaattagaagtgtcgcaatattttagagtttgtttggagttgaagcatttaaattgttttaagagagagaatcgacat |
118 |
Q |
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| T |
39718853 |
cgtagaacactgaacatatttttaattagaagtgttgcagtattttagagtttgtttggagttgaagcattcaaattgttttaagaaagagaatcgacat |
39718754 |
T |
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| Q |
119 |
ggtacgacacagttgataaattatcatcttagtaaatgatttgatcttaaattgatgcatatgaaagaatatatgtatccctttatatgaattgaagtat |
218 |
Q |
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| T |
39718753 |
ggtgcgacacagttgataaattatcatcttagtaaatgatttgattttaaattgatgcatatgaaagaatatatgtatccctttatatgaattgaagtat |
39718654 |
T |
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| Q |
219 |
ttgaaggaattagtctctaactatagattgaaataaatagtattcatcaagagagagagataaaagggtgatgaagaagcctattagtatcaacaaagtg |
318 |
Q |
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| T |
39718653 |
ttgaaggaattagtctctaactatagattgaaataaatagtattcatcaagagagagggataaaagggtgatgaagaagcctattagtatcaacaaagtg |
39718554 |
T |
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| Q |
319 |
aaatcct |
325 |
Q |
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| T |
39718553 |
aaatcct |
39718547 |
T |
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