View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16600_low_3 (Length: 781)

Name: NF16600_low_3
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16600_low_3
NF16600_low_3
[»] chr7 (8 HSPs)
chr7 (631-765)||(35428002-35428137)
chr7 (142-221)||(37162797-37162876)
chr7 (143-217)||(12633031-12633105)
chr7 (143-207)||(12632493-12632557)
chr7 (33-77)||(12632924-12632968)
chr7 (541-580)||(16701018-16701057)
chr7 (541-580)||(17675254-17675293)
chr7 (296-327)||(35427028-35427059)
[»] chr5 (6 HSPs)
chr5 (142-217)||(17511924-17511999)
chr5 (143-207)||(17515547-17515611)
chr5 (10-77)||(17512062-17512129)
chr5 (153-207)||(21044619-21044673)
chr5 (142-207)||(21045082-21045147)
chr5 (145-207)||(8705764-8705826)
[»] chr2 (2 HSPs)
chr2 (142-217)||(8151560-8151631)
chr2 (11-77)||(8151698-8151764)
[»] chr6 (3 HSPs)
chr6 (142-207)||(12142954-12143019)
chr6 (142-207)||(12142109-12142174)
chr6 (153-196)||(12143531-12143574)
[»] scaffold0133 (1 HSPs)
scaffold0133 (142-207)||(10034-10099)
[»] chr8 (2 HSPs)
chr8 (364-413)||(3047871-3047922)
chr8 (397-451)||(32304941-32304995)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 9e-66; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 631 - 765
Target Start/End: Original strand, 35428002 - 35428137
Alignment:
Q  631 caaaaacagaacacacacctagcac-agcacactcattttcctcccaaatcactaactagactatgatcgcctaaatttccaagtaaacaacaacatata 729  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35428002 caaaaacagaacacacacctagcactagcacactcattttcctcccaaatcactaactagactatgatcgcctaaatttccaagtaaacaacaacatata 35428101  T
Q  730 ggtaaccaccaatttcaagtgcaactactataaatt 765  Q
    ||||||||||||||||||||||||||||||||||||    
T  35428102 ggtaaccaccaatttcaagtgcaactactataaatt 35428137  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 37162876 - 37162797
Alignment:
Q  142 aaaaagaagcaacacgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgttatgtaattgcagtcc 221  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37162876 aaaaagaagcaatacatggcacaattttactggctatgtcatgtgacatagcccgccacaatgttatgtaagtgcagtcc 37162797  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 12633031 - 12633105
Alignment:
Q  143 aaaagaagcaacacgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgttatgtaattgca 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  12633031 aaaagaagcaacatgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgttacgtaagtgca 12633105  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 12632557 - 12632493
Alignment:
Q  143 aaaagaagcaacacgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgtta 207  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  12632557 aaaagaagcaacacgtggcacaattttatttgctatgtcatgtgacatagcccgccacaatgtta 12632493  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 12632924 - 12632968
Alignment:
Q  33 agggagaagtgagggaaagcataacacgttttgaaggagaagaag 77  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||    
T  12632924 agggagaagtgagggaacgcagaacgcgttttgaaggagaagaag 12632968  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 580
Target Start/End: Complemental strand, 16701057 - 16701018
Alignment:
Q  541 gattcaattgcaagatgctcacaagaaaccgtacaatatt 580  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  16701057 gattcaaatgcaagatgctcacaagaaaccgtaaaatatt 16701018  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 580
Target Start/End: Complemental strand, 17675293 - 17675254
Alignment:
Q  541 gattcaattgcaagatgctcacaagaaaccgtacaatatt 580  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  17675293 gattcaaatgcaagatgctcacaagaaaccgtaaaatatt 17675254  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 327
Target Start/End: Original strand, 35427028 - 35427059
Alignment:
Q  296 ctagaagtaatagaaaagtcacaatgcaacaa 327  Q
    ||||||||||||||||||||||||||||||||    
T  35427028 ctagaagtaatagaaaagtcacaatgcaacaa 35427059  T

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Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 17511999 - 17511924
Alignment:
Q  142 aaaaagaagcaacacgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgttatgtaattgca 217  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  17511999 aaaaagaagcaacatgtggcacaattttactggctatgccatgtgacatagcccgccacaatgttacgtaagtgca 17511924  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 17515547 - 17515611
Alignment:
Q  143 aaaagaagcaacacgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgtta 207  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17515547 aaaagaagcaacatgtggcacaattttacttgctatgtcatgtgacatagcccgccacaatgtta 17515611  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 17512129 - 17512062
Alignment:
Q  10 gtagcatagggagaagtgaagcaagggagaagtgagggaaagcataacacgttttgaaggagaagaag 77  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||| |||||| ||||||||||||    
T  17512129 gtagcacagggagaagtgaagcaagggagaagtgagggaacgccgaacgcgttttaaaggagaagaag 17512062  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 21044673 - 21044619
Alignment:
Q  153 acacgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgtta 207  Q
    ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||    
T  21044673 acacgtggcgcaatattactagctatgtcatgtgacatagcccgccacaatgtta 21044619  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 21045082 - 21045147
Alignment:
Q  142 aaaaagaagcaacacgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgtta 207  Q
    |||||||||  |||| ||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  21045082 aaaaagaagtgacacatggcgaaatgttactggctatgtcatgtgacatagcccgccacaatgtta 21045147  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 8705826 - 8705764
Alignment:
Q  145 aagaagcaacacgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgtta 207  Q
    |||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||  |||||||    
T  8705826 aagaagcaacacgtggtacaatattactcgctatgtcatgtgagatagcccgccggaatgtta 8705764  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 8151631 - 8151560
Alignment:
Q  142 aaaaagaagcaacacgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgttatgtaattgca 217  Q
    ||||||||||||||||||||||||| |||||    ||||||||||||||||||||||||||||||| |||| ||||    
T  8151631 aaaaagaagcaacacgtggcacaatcttact----atgtcatgtgacatagcccgccacaatgttacgtaagtgca 8151560  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 8151764 - 8151698
Alignment:
Q  11 tagcatagggagaagtgaagcaagggagaagtgagggaaagcataacacgttttgaaggagaagaag 77  Q
    ||||| |||||||||||||||||||||||| |||||||| ||  ||| |||||||||||||||||||    
T  8151764 tagcacagggagaagtgaagcaagggagaaatgagggaacgccgaacgcgttttgaaggagaagaag 8151698  T

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Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 12143019 - 12142954
Alignment:
Q  142 aaaaagaagcaacacgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgtta 207  Q
    |||||||||  |||||||||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  12143019 aaaaagaagtgacacgtggcacaatattactggctatgtcatgtaacatagcccgccactatgtta 12142954  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 12142174 - 12142109
Alignment:
Q  142 aaaaagaagcaacacgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgtta 207  Q
    |||||||||  ||| |||||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  12142174 aaaaagaagtgacatgtggcacaatattactggctatgtcatgtaacatagcccgccactatgtta 12142109  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 12143531 - 12143574
Alignment:
Q  153 acacgtggcacaattttactggctatgtcatgtgacatagcccg 196  Q
    |||||||||||||| ||| |||||||||||||||||||||||||    
T  12143531 acacgtggcacaatattattggctatgtcatgtgacatagcccg 12143574  T

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Target: scaffold0133 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 10034 - 10099
Alignment:
Q  142 aaaaagaagcaacacgtggcacaattttactggctatgtcatgtgacatagcccgccacaatgtta 207  Q
    |||||||||  |||| |||  |||| |||||||||||||||||||||||||||| |||||||||||    
T  10034 aaaaagaagtgacacatggtgcaatattactggctatgtcatgtgacatagcccaccacaatgtta 10099  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 3047922 - 3047871
Alignment:
Q  364 ttacactgtcaatttcaaaatgaaaactgaaac--ttacatcatattgtaca 413  Q
    ||||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  3047922 ttacattgtcaatttcaaaatgaaaactgaaacttttacatcatattgtaca 3047871  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 451
Target Start/End: Complemental strand, 32304995 - 32304941
Alignment:
Q  397 ttacatcatattgtacaaatatatccgaatgctaattttagtggaatgcaaattt 451  Q
    |||||||||| |||||||| |||||| |||| |||||||||||| ||||||||||    
T  32304995 ttacatcataatgtacaaaaatatccaaatggtaattttagtgggatgcaaattt 32304941  T

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