View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_low_30 (Length: 322)
Name: NF16600_low_30
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 10512917 - 10512765
Alignment:
| Q |
18 |
attagctgtgattgaatcttgtggcccataggctacaattgttgtagataccagattgttcaaaatagtgtagcctttattttttcaatgataaaaatat |
117 |
Q |
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| T |
10512917 |
attagctgtgattgaaacttgtggcccataggctacaattgttgtaaataccagattgttcaaaatagtgtagcctttattttttcaatgat-aaaataa |
10512819 |
T |
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| Q |
118 |
aagaaaatgatttatcttctaacattttctaaagtatcgaggtagcatgtgatg |
171 |
Q |
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| T |
10512818 |
aagaaaatgatttaccttctaacattttctaaagtatcgaggtagcatgtgatg |
10512765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 10593951 - 10593797
Alignment:
| Q |
18 |
attagctgtgattgaatcttgtggcccataggctacaattgttgtagataccagattgttcaaaatagtgtagcctttatt--ttttcaatgataaaaat |
115 |
Q |
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| T |
10593951 |
attaactgtgattgaatcttgtggcccataggctacaattcttgtaaataccagattgttcaaaatagtgtagcctttattttttttcaatgat-aaaat |
10593853 |
T |
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| Q |
116 |
ataagaaaatgatttatcttctaacattttctaaagtatcgaggtagcatgtgatg |
171 |
Q |
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| T |
10593852 |
ataagaaaatgatttatcttctaacattttctaaagtatcgaggtagcatgtgatg |
10593797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 10509746 - 10509663
Alignment:
| Q |
18 |
attagctgtgattgaatcttgtggcccataggctacaattgttgtagataccagattgttcaaaatagtgtagcctttattttt |
101 |
Q |
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| T |
10509746 |
attagctgtgattgaatcttgtggcccatatgctacaattgttgtaaataccagattgttcaaaatagtgtagcctttattttt |
10509663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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