View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16600_low_34 (Length: 302)
Name: NF16600_low_34
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 30542265 - 30542410
Alignment:
| Q |
36 |
atggtaaccatcacatgattcacatgcttatataccataatacaaacctaaagcttcctattattcatatccttcaaacacactcttttaattgtgaagt |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30542265 |
atggtaaccatcacatgattcacatgcttatataccataatacaaacctaaagcttcccattattcatatccttcaaacacactcttttaattgtgaag- |
30542363 |
T |
|
| Q |
136 |
taattaagaccattttatcnnnnnnnaagaaaagaatgtgttatattgtc |
185 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30542364 |
---ttaagaccattttatctttttttaagaaaagaatgtgttatattgtc |
30542410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 30542468 - 30542508
Alignment:
| Q |
241 |
ctcccactaaatagagaggtatgatttcggtgttgatcaaa |
281 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30542468 |
ctcccactaaatagagaggtatgattctggtgttgatcaaa |
30542508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 30994010 - 30994038
Alignment:
| Q |
8 |
tgatatgaaaaaggatgagtaaataggca |
36 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30994010 |
tgatatgaaaaaggatgagtaaataggca |
30994038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University