View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_low_36 (Length: 297)
Name: NF16600_low_36
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 4903641 - 4903907
Alignment:
| Q |
15 |
cacatctttttcttcattgcgaaggggttggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattat |
114 |
Q |
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| T |
4903641 |
cacatatttttcttcattgcgaaggggttggtaaggtctggtgtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattat |
4903740 |
T |
|
| Q |
115 |
gtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaat |
214 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903741 |
gtggcaatgttggaatggtgagtttttgaacaaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaat |
4903840 |
T |
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| Q |
215 |
gacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtctt |
281 |
Q |
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| T |
4903841 |
gacagaattttcaacaatgttgtgacagatgtggaggagctgttggaatctgttaaggtgttgtctt |
4903907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 1557161 - 1557320
Alignment:
| Q |
59 |
aagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgca |
158 |
Q |
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| T |
1557161 |
aagcttatggactggctggactttaattttttaatccccccaaatctgtttattatgtgggaatgttggattggagctgttgtcaataaaaagattcgga |
1557260 |
T |
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| Q |
159 |
ggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgaca |
218 |
Q |
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| T |
1557261 |
agggtgtgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatgaca |
1557320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 12123902 - 12123866
Alignment:
| Q |
197 |
atttggaaagcgaggaatgacagaattttcaacaatg |
233 |
Q |
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||||||||||| |||||||||||||||||||| |||| |
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| T |
12123902 |
atttggaaagctaggaatgacagaattttcaataatg |
12123866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 22153916 - 22153650
Alignment:
| Q |
15 |
cacatctttttcttcattgcgaaggggttggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
22153916 |
cacatctttttcttcattgcgaaggggttggtaaggtctggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattat |
22153817 |
T |
|
| Q |
115 |
gtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaat |
214 |
Q |
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| T |
22153816 |
gcgggaatgttggaatggtgagtttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaat |
22153717 |
T |
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| Q |
215 |
gacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtctt |
281 |
Q |
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| T |
22153716 |
gacataattttcaacaatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtctt |
22153650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 22209831 - 22209565
Alignment:
| Q |
15 |
cacatctttttcttcattgcgaaggggttggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
22209831 |
cacatctttttcttcattgcgaaggggttggtaaggtctggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattat |
22209732 |
T |
|
| Q |
115 |
gtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaat |
214 |
Q |
| |
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| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22209731 |
gcgggaatgttggaatggtgagtttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaat |
22209632 |
T |
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| Q |
215 |
gacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtctt |
281 |
Q |
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| T |
22209631 |
gacataattttcaacaatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtctt |
22209565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 41450779 - 41450828
Alignment:
| Q |
84 |
attttttaattcctcctaatctgtttattatgtgggaatgttggaatggt |
133 |
Q |
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|||||||||||||||| ||| |||||||| | ||| |||||||||||||| |
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| T |
41450779 |
attttttaattcctccaaatttgtttattctttggcaatgttggaatggt |
41450828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 233
Target Start/End: Original strand, 53562135 - 53562303
Alignment:
| Q |
65 |
atggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtg |
164 |
Q |
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||||| |||||||| ||||||||| ||||||| || ||||| |||||| ||||||||||||||||||| | |||| ||||| ||| || | |||| |
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| T |
53562135 |
atggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagacccgtaaaggtg |
53562234 |
T |
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| Q |
165 |
gtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatg |
233 |
Q |
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| T |
53562235 |
ttagaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatg |
53562303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 38185584 - 38185505
Alignment:
| Q |
51 |
tctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaat |
130 |
Q |
| |
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| T |
38185584 |
tctggcgtgagcttatggagtggctggaattcaattttataattccaccgaatctgtttatcacgtgggaatgttggaat |
38185505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 34821538 - 34821358
Alignment:
| Q |
53 |
tggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagc |
152 |
Q |
| |
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||||||||||| ||||||||||| || ||||| || |||| ||||| ||| ||||||| |||||| | ||||||||||||| | || ||||||||| |
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| T |
34821538 |
tggagtaagctcatggagtggttagacattaatattataatccctccgaatttgtttatcatgtggaattgttggaatggtgcggttcacaataaaaaga |
34821439 |
T |
|
| Q |
153 |
tgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatg |
233 |
Q |
| |
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| || | ||| | || | |||||||| || || |||||||| || ||||||||||||||||| | ||||| ||||||| |
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| T |
34821438 |
ttcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatg |
34821358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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