View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_low_45 (Length: 237)
Name: NF16600_low_45
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_45 |
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| [»] scaffold0002 (3 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 133811 - 133685
Alignment:
| Q |
96 |
cccaattgttgttacttgaaatttattctccctgtgtgctacaaagtttaaaaatcatgtattgtgctaccctgttttcgttacccaaaattatttggag |
195 |
Q |
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||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
133811 |
cccaattgttgttacttgaaattgaatctccctgtttgctacaaagtgtaaaaatcatgtattgtgctaccctgttttcgttacccaaaattatttggag |
133712 |
T |
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| Q |
196 |
cagcatttgtcttcgattcttggaact |
222 |
Q |
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| T |
133711 |
cagcatttgtcttcgattcttggaact |
133685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 143859 - 143738
Alignment:
| Q |
96 |
cccaattgttgttacttgaaatttattctccctgtgtgctacaaagtttaaaaatcatgtattgtgctaccctgttttcgttacccaaaattatttggag |
195 |
Q |
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|||||| |||||||||||| ||| ||||||| |||||||| ||| || || |||| ||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
143859 |
cccaatggttgttacttgagattgattctccttgtgtgcttcaaggtgcaacaatctattattgtgataccctgttttctttacccaaaattattaggag |
143760 |
T |
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| Q |
196 |
cagcatttgtcttcgattcttg |
217 |
Q |
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| T |
143759 |
cagcatttgtcttcgattcttg |
143738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 152164 - 152043
Alignment:
| Q |
96 |
cccaattgttgttacttgaaatttattctccctgtgtgctacaaagtttaaaaatcatgtattgtgctaccctgttttcgttacccaaaattatttggag |
195 |
Q |
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|||||| |||||||||||| ||| ||||||| |||||||| ||| || || |||| ||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
152164 |
cccaatggttgttacttgagattgattctccttgtgtgcttcaaggtgcaacaatctattattgtgataccctgttttctttacccaaaattattaggag |
152065 |
T |
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| Q |
196 |
cagcatttgtcttcgattcttg |
217 |
Q |
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|||||||||||||||||||||| |
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| T |
152064 |
cagcatttgtcttcgattcttg |
152043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 13173177 - 13173303
Alignment:
| Q |
96 |
cccaattgttgttacttgaaatttattctccctgtgtgctacaaagtttaaaaatcatgtattgtgctaccctgttttcgttacccaaaattatttggag |
195 |
Q |
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|
||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13173177 |
cccaattgttgttacttgaaattgaatctccctgtttgctacaaagtgtaaaaatcatgtattgtgctaccctgttttcgttacccaaaattatttggag |
13173276 |
T |
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| Q |
196 |
cagcatttgtcttcgattcttggaact |
222 |
Q |
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||||||||||||||||||||||||||| |
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| T |
13173277 |
cagcatttgtcttcgattcttggaact |
13173303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 13335053 - 13335179
Alignment:
| Q |
96 |
cccaattgttgttacttgaaatttattctccctgtgtgctacaaagtttaaaaatcatgtattgtgctaccctgttttcgttacccaaaattatttggag |
195 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||| |||||||| |||||| || ||||| ||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
13335053 |
cccaatggttgttacttgagattgattctccttgtgtgcttcaaagtgcaacaatcagttattgtgataccctgttttctttacccaaaattattaggag |
13335152 |
T |
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| Q |
196 |
cagcatttgtcttcgattcttggaact |
222 |
Q |
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||||||||||||||||||||||||||| |
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| T |
13335153 |
cagcatttgtcttcgattcttggaact |
13335179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 13346252 - 13346376
Alignment:
| Q |
98 |
caattgttgttacttgaaatttattctccctgtgtgctacaaagtttaaaaatcatgtattgtgctaccctgttttcgttacccaaaattatttggagca |
197 |
Q |
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|||| |||||||||||| ||| ||||||| |||||||| |||||| || ||||| |||||||| |||||||||||| ||||||| ||||||| |||||| |
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| T |
13346252 |
caatggttgttacttgagattgattctccttgtgtgcttcaaagtgcaacaatcaggtattgtgataccctgttttctttacccagaattattaggagca |
13346351 |
T |
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| Q |
198 |
gcatttgtcttcgattcttggaact |
222 |
Q |
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||||||||||||||||||||||||| |
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| T |
13346352 |
gcatttgtcttcgattcttggaact |
13346376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 13163129 - 13163250
Alignment:
| Q |
96 |
cccaattgttgttacttgaaatttattctccctgtgtgctacaaagtttaaaaatcatgtattgtgctaccctgttttcgttacccaaaattatttggag |
195 |
Q |
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|||||| |||||||||||| ||| ||||||| |||||||| ||| || || |||| ||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
13163129 |
cccaatggttgttacttgagattgattctccttgtgtgcttcaaggtgcaacaatctattattgtgataccctgttttctttacccaaaattattaggag |
13163228 |
T |
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| Q |
196 |
cagcatttgtcttcgattcttg |
217 |
Q |
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|||||||||||||||||||||| |
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| T |
13163229 |
cagcatttgtcttcgattcttg |
13163250 |
T |
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