View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_low_51 (Length: 227)
Name: NF16600_low_51
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 41482024 - 41481827
Alignment:
| Q |
13 |
ataattctgaaatcatcccaagcaacaagcacaaaatagtactagttgtgaatattgtggttactgcaaaacatgtgactacgaggtgtggcttcacaac |
112 |
Q |
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| T |
41482024 |
ataattctgaaatcatcccaagcaacaagcacaaaatagtactagttgtgaatattgtggttactgcaaaacatgtgattacgaggtgtggcttcacaac |
41481925 |
T |
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| Q |
113 |
tttgccaataaagaaaccattctagagtacgaaaacatgtgaccaatgtcatgaaaagtagatgacatctgctgtaagtttgttctagaaaaaggatg |
210 |
Q |
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| T |
41481924 |
tttgccaataaagaaaccattctagagtacgaaaacatgtgaccaatgtcaagaaaagtagatgacatctgctgtaagtttgttctagaaaaaggatg |
41481827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 41485285 - 41485100
Alignment:
| Q |
19 |
ctgaaatcatcccaagcaacaagcacaaaatagtactagttgtgaatattgtggttactgcaaaacatgtgactacgaggtgtggcttcacaactttgcc |
118 |
Q |
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||||||| ||||| |||||||||||| |||||||||||||| |||| |||||||| | ||||||||||||| || ||||||||||||||| | | |||| |
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| T |
41485285 |
ctgaaattatccctagcaacaagcacggaatagtactagttgcgaatcttgtggttccagcaaaacatgtgaatatgaggtgtggcttcactattctgcc |
41485186 |
T |
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| Q |
119 |
aataaagaaaccattctagagtacgaaaacatgtgaccaatgtcatgaaaagtagatgacatctgctgt-aagtttgttctagaaa |
203 |
Q |
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| T |
41485185 |
cataaagaaaccattctagagtgcgaaaacatgtcaccaatgacaagaaaagtagatgacatctgctgtaaagtttgttctagaaa |
41485100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 45386079 - 45386193
Alignment:
| Q |
80 |
aaaacatgtgactacgaggtgtggcttcacaactttgccaataaagaaaccattctagagtacgaaaacatgtgaccaatgtcatgaaaagtagatgaca |
179 |
Q |
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| T |
45386079 |
aaaacatgtgaatatgaggcgtggcttcacaactctgcctataaagaaaccattctagagtgcgaaaacatgccaccaatgacaagaaaagtagatgaaa |
45386178 |
T |
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| Q |
180 |
tctgctgtaagtttg |
194 |
Q |
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| || | |||||||| |
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| T |
45386179 |
tttgatataagtttg |
45386193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 45385989 - 45386052
Alignment:
| Q |
19 |
ctgaaatcatcccaagcaacaagcacaaaatagtactagttgtgaatattgtggttactgcaaa |
82 |
Q |
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| T |
45385989 |
ctgaaatcatcccaagcaacaagtacaaaatagtactagttgtgaatcttgtggttactgcaaa |
45386052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 5701187 - 5701301
Alignment:
| Q |
19 |
ctgaaatcatcccaagcaacaagcacaaaatagtactagttgtgaatattgtggttactgcaaaacatgtgactacgaggtgtggcttcacaactttgcc |
118 |
Q |
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||||||||||| ||| |||||||||| | |||| |||||| |||||| |||||||| ||||||||||||||| || |||||||||||||||||| | || |
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| T |
5701187 |
ctgaaatcatctcaaacaacaagcaccagatagaactagtcgtgaatcttgtggtttctgcaaaacatgtgagtatgaggtgtggcttcacaacacttcc |
5701286 |
T |
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| Q |
119 |
aataaagaaaccatt |
133 |
Q |
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|| ||||||||||| |
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| T |
5701287 |
catgaagaaaccatt |
5701301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 5697764 - 5697834
Alignment:
| Q |
19 |
ctgaaatcatcccaagcaacaagcacaaaatagtactagttgtgaatattgtggttactgcaaaacatgtg |
89 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |
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| T |
5697764 |
ctgaaattatctcaagcaacaagcacaaaatagtactagttgtgaattttggggttaatgcaaaacatgtg |
5697834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 5694785 - 5694873
Alignment:
| Q |
19 |
ctgaaatcatcccaagcaacaagcacaaaatagtactagttgtgaatattgtggttactgcaaaacatgtgactacgaggtgtggcttc |
107 |
Q |
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||||||| ||| ||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||| | || |||||||||| |
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| T |
5694785 |
ctgaaattatctcaagcaacaagcaaaaaatagtactagttgtgaattttagggttattgcaaaacatgtgaaaatgaagtgtggcttc |
5694873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 5736414 - 5736485
Alignment:
| Q |
19 |
ctgaaatcatcccaagcaacaagcacaaaatagtactagttgtgaatattgtggttactgcaaaacatgtga |
90 |
Q |
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||||||| ||| |||| |||||||| ||||||||||||||||||||| || ||||| |||||||||||||| |
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| T |
5736414 |
ctgaaattatctcaagaaacaagcaaaaaatagtactagttgtgaattttagggttattgcaaaacatgtga |
5736485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 5773526 - 5773597
Alignment:
| Q |
19 |
ctgaaatcatcccaagcaacaagcacaaaatagtactagttgtgaatattgtggttactgcaaaacatgtga |
90 |
Q |
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||||||| ||| |||| |||||||| ||||||||||||||||||||| || ||||| |||||||||||||| |
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| T |
5773526 |
ctgaaattatctcaagaaacaagcaaaaaatagtactagttgtgaattttagggttattgcaaaacatgtga |
5773597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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