View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16600_low_52 (Length: 217)

Name: NF16600_low_52

Description: NF16600

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16600_low_52

[»] chr8 (2 HSPs)

[»] chr5 (1 HSPs)

[»] chr1 (1 HSPs)

[»] chr3 (1 HSPs)

Alignment Details

Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 106; E-Value: 3e-53

Query Start/End: Original strand, 16 - 166

Target Start/End: Original strand, 26963079 - 26963225

Alignment:

Q	16	ataagaaattaaggaaatcaatccttagagatcgatcacctttgttttaagatacaacaatattatattcatgagatatatccatatcattttaacattc	115	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26963079	ataagaaattatggaaatcaatccttagatatc----acctttcttttaagatacgacaatattatattcatgagatatatccatatcattttaacattc	26963174	T

Q	116	accaatcatcaaaataacatgaaatgaattctgtgccaataatattatccg	166	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26963175	accagtcatcaaaataacatgaaatgaattatgtaccaataatattatccg	26963225	T

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Target: chr8; HSP #2

Raw Score: 84; E-Value: 4e-40

Query Start/End: Original strand, 49 - 202

Target Start/End: Original strand, 26930160 - 26930310

Alignment:

Q	49	gatcacctttgttttaagatacaacaatattatattcatgagatatatccatatcattttaacattcaccaatcatcaaaataacatgaaatgaattctg	148	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|
T	26930160	gatcacctttgttttaagatacgataatattaatttcatgagatatttccatatcattttaacattcaccaatcatcaaaataacaagatatgaa---tg	26930256	T

Q	149	tgccaataatattatccgtacaattgtagcagccaaagataccgcaacataatt	202	Q
		\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|
T	26930257	tgccaaacatattctctgtacaattgtagcagccagagatgccccaacataatt	26930310	T

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Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 52; E-Value: 5e-21

Query Start/End: Original strand, 52 - 143

Target Start/End: Original strand, 27564429 - 27564520

Alignment:

Q	52	cacctttgttttaagatacaacaatattatattcatgagatatatccatatcattttaacattcaccaatcatcaaaataacatgaaatgaa	143	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	27564429	cacctttgtcttaagatacgaaaatattaatttcatgagatatttccatattattctaacattaaccaatcatcaaaataacaagaaatgaa	27564520	T

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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 47; E-Value: 5e-18

Query Start/End: Original strand, 16 - 143

Target Start/End: Original strand, 29413651 - 29413773

Alignment:

Q	16	ataagaaattaaggaaatcaatccttagagatcgatcacctttgttttaagatacaacaatattatattcatgagatatatccatatcattttaacattc	115	Q
		\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|
T	29413651	ataaggaattatggaaatcaatcctcagagatc----acctt-gtttcaagatacgaaaatattaatttcatgagatatttccatattattgtaacatta	29413745	T

Q	116	accaatcatcaaaataacatgaaatgaa	143	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	29413746	accaatcatcgaaataacaagaaatgaa	29413773	T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 49 - 101

Target Start/End: Complemental strand, 24202353 - 24202301

Alignment:

Q	49	gatcacctttgttttaagatacaacaatattatattcatgagatatatccata	101	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	24202353	gatctcctttgttttaagatacgaaaatattaaattcatgagatatttccata	24202301	T

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