View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16600_low_54 (Length: 211)
Name: NF16600_low_54
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 51837457 - 51837630
Alignment:
| Q |
23 |
aggtgtagggttttaactgttgtggatactcggcagaggtggatctagattttttatattgatttggataaaatatcaaagaaacaatatatattaacaa |
122 |
Q |
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| T |
51837457 |
aggtgtagggttttaactgttgtggatactcggcagaggtggatctagacttttgatattgatttggataaaatatcaaagaaataatatatattaacaa |
51837556 |
T |
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| Q |
123 |
agcgaaattgcgatgcattaaacacaacaacaaaaatggtttaggggtgtctttttaccaacctatcacaggtt |
196 |
Q |
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| T |
51837557 |
agcgaaattgtgatgcattaaacacaacaacaaaaatggtttaggggtgtctttttaccaacctatcacaggtt |
51837630 |
T |
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 40154788 - 40154847
Alignment:
| Q |
91 |
taaaatatcaaagaaacaatatatattaacaaagcgaaattgcgatgcattaaacacaac |
150 |
Q |
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| T |
40154788 |
taaaatatcaaagaaactatatatattaacaaaacgaacttgagacacattaagcacaac |
40154847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 26736627 - 26736567
Alignment:
| Q |
68 |
tagattttttatattgatttggataaaatatcaaagaaacaatatatattaacaaagcgaa |
128 |
Q |
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| T |
26736627 |
tagacttttgatattggtgtggctaaaatatcaaagaaactatatatattaataaagcgaa |
26736567 |
T |
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