View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16600_low_7 (Length: 486)
Name: NF16600_low_7
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 283 - 473
Target Start/End: Original strand, 36465 - 36655
Alignment:
| Q |
283 |
cattgactctttcttcacctttgtgttgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccatt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36465 |
cattgactctttcttcacctttgtgttgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccatt |
36564 |
T |
|
| Q |
383 |
caatctctttttcttcttactattggtccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcct |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36565 |
caatctctttttcttcttactattggtccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcct |
36655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36172 - 36402
Alignment:
| Q |
1 |
ctatttatgttttgtgctggaagtatatacgaaagtttttgctatttctgttgccacattttttaccagacaccatttatga---------------taa |
85 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36172 |
ctatttatgttttgtgctggaagtatatatgaaagtttttgctatttctgttgccacattttttaccagacaccatttatgaatcatgaattggtgataa |
36271 |
T |
|
| Q |
86 |
gtatagataatggttgaaaacggacttcactagatttagaatcattaccggaagcattgttttttaccttttaatcgtcattattaaatgatgatgagta |
185 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36272 |
gtatagataatggttgaaa-cggacttcactagatttagaatcattaccggaagcattgttttttaccttttaatcgtcattattaa---atgatgagta |
36367 |
T |
|
| Q |
186 |
tgagagaatatgagaacttaagttctactattaca |
220 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
36368 |
tgagagaatatgagaacttacgttctactattaca |
36402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 309 - 464
Target Start/End: Complemental strand, 8675837 - 8675682
Alignment:
| Q |
309 |
tgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccattcaatctctttttcttcttactattgg |
408 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||| | |||| ||| | |||| |
|
|
| T |
8675837 |
tgcagtcaatcggttctctgcaaaagaaatattcgattggatcttttgaactgctgagtaagactgctcctattcaagctctctctcttattattcttgg |
8675738 |
T |
|
| Q |
409 |
tccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctt |
464 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
8675737 |
tccatttgttgattactatctcagtggcaagttgataaccaactttaagatgtctt |
8675682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University