View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16600_low_8 (Length: 476)
Name: NF16600_low_8
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 33754363 - 33754781
Alignment:
| Q |
1 |
cgatttgatgtaatcaacaaaacaacgcaataacgtagtcatgctttagtgactgttcaatcaagattaagcggtcttaatttgagttcgatattttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
33754363 |
cgatttgatgtaatcaacaaaacaacgcaataacatagtcatgctttagtgactgttcaatcaagattaagcggtcttgatttgagctcgatattttaaa |
33754462 |
T |
|
| Q |
101 |
attaaacactaaaaattaagtttannnnnnnnnaaattgttcaattaatattgaacggctaacaatgtcttgacagcatgtacgtggcaaaaagaaagta |
200 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
33754463 |
attaaacactaaaaattaagtctatttttttt-aaattgttcaattaatattgaacggctaacaatgtcttgacagcatgaacgtggcaaaaagaaacta |
33754561 |
T |
|
| Q |
201 |
cggtggatcctatttcctaaaaatatttttgttgtgtttactatgttagttggaatcacaactgcctatttgatgatgtgtataaaattccaaatttcga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33754562 |
cggtggatcctatttcctaaaaatatttttgttgtgtttactatgttagttggaatcacaactgcctatttgatgatgtgtataaaattccaaatttcaa |
33754661 |
T |
|
| Q |
301 |
taactgtcgttcgctaaagaggagaatagtgagttgtttgtttgaaggcaataaatgataa---aaccccaccaacgcatgatgtatagtactataaagt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
33754662 |
taactgtcgttcgctaaagaggagaatagtgagttgtttgtttgaaggcaataaatgataataaaaccccaccaacgcatgatgtag-----tataaagc |
33754756 |
T |
|
| Q |
398 |
ttggatgaagtgagtgagtgaaacc |
422 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
33754757 |
ttggatgaagtgagtgagtgaaacc |
33754781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 458
Target Start/End: Original strand, 33754803 - 33754831
Alignment:
| Q |
430 |
tcgaataatggatcctcttaccaagtagg |
458 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
33754803 |
tcgaataatggatcctcttaccaagtagg |
33754831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University