View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16600_low_9 (Length: 463)
Name: NF16600_low_9
Description: NF16600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16600_low_9 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 1968786 - 1969226
Alignment:
| Q |
19 |
attatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968786 |
attatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctt |
1968885 |
T |
|
| Q |
119 |
tcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968886 |
tcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgag |
1968985 |
T |
|
| Q |
219 |
tagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacactttgcagtttttacc------atctgggttcttggagagaaccaaggag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1968986 |
tagcagttcatctagtgcaggatatctttcagcagaaaatgatattgacactttgcagtttttaccatctggatctgggttcttggagagaaccaaggag |
1969085 |
T |
|
| Q |
313 |
aaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969086 |
aaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttg |
1969185 |
T |
|
| Q |
413 |
agagtgtgttgcatggtgtgccactaatcacatggcctttg |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969186 |
agagtgtgttgcatggtgtgccactaatcacatggcctttg |
1969226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 2008229 - 2007798
Alignment:
| Q |
19 |
attatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctt |
118 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
2008229 |
attatcgaaacagaaacaaaatctggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcaaccttgttcggttttgtatgtatctt |
2008130 |
T |
|
| Q |
119 |
tcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgag |
218 |
Q |
| |
|
| |||||||| |||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
2008129 |
ttgggagtggaggtacactttcacaggagcaaattgtggagctagctttgggtttggaattgagtaatacaaaattcttgtgggttttgcgagcaccgag |
2008030 |
T |
|
| Q |
219 |
tagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2008029 |
tagcagttcatctagtgcaggatatctttcagcagaaaatgatattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggt |
2007930 |
T |
|
| Q |
319 |
tttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2007929 |
tttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttgacgcattgtggctggaattcaacccttgagagtg |
2007830 |
T |
|
| Q |
419 |
tgttgcatggtgtgccactaatcacatggcct |
450 |
Q |
| |
|
|| |||| |||||||| ||||||| |||||| |
|
|
| T |
2007829 |
tggtgcacggtgtgccgttaatcacgtggcct |
2007798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 76 - 450
Target Start/End: Complemental strand, 2004792 - 2004418
Alignment:
| Q |
76 |
tggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttgg |
175 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
2004792 |
tggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggtttgg |
2004693 |
T |
|
| Q |
176 |
aattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacactttgca |
275 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| ||||||| |||||||| ||| |
|
|
| T |
2004692 |
aattgagtaataagatattcttgtgggttttgcgagcaccaagtagtagttcatctagtgcaggatatttttcagcacaaaatgatgctgacacttggca |
2004593 |
T |
|
| Q |
276 |
gtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggt |
375 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | || |
|
|
| T |
2004592 |
gtttttgccatccgggttcttggagagaaccaaggagaaaggttttgtcattacatcatgggtgccgcagattcaaatcctaagtcacaactcagtcggc |
2004493 |
T |
|
| Q |
376 |
ggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatcacatggcct |
450 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
2004492 |
gggttcttgactcattgtggctggaattcaaccctagagagtgtggtgcatggtgtgccactaataacatggcct |
2004418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 48 - 450
Target Start/End: Original strand, 1964879 - 1965281
Alignment:
| Q |
48 |
tgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaa |
147 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||| || ||||| || |||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1964879 |
tgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcgggagtggtggtacactttcacacgaa |
1964978 |
T |
|
| Q |
148 |
caaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatcttt |
247 |
Q |
| |
|
|||||||| |||||||| | || || |||||||||||| | |||||| |||||| || ||||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
1964979 |
caaattgttcagctggctctggggttagaattgagtaatcagaaattcctatgggttgtgtgagcaccaagtagtagttcatctagtgcagcatatcttt |
1965078 |
T |
|
| Q |
248 |
cagcagaaaatgacattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagat |
347 |
Q |
| |
|
||||| |||||||| |||| ||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
1965079 |
cagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagat |
1965178 |
T |
|
| Q |
348 |
tcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatcacatgg |
447 |
Q |
| |
|
||||||||| ||||| | |||||||| || ||||||| ||| ||||| ||||| ||||||||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
1965179 |
tcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcacatgg |
1965278 |
T |
|
| Q |
448 |
cct |
450 |
Q |
| |
|
||| |
|
|
| T |
1965279 |
cct |
1965281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 450
Target Start/End: Complemental strand, 2011841 - 2011413
Alignment:
| Q |
22 |
atccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctttcg |
121 |
Q |
| |
|
||||| |||| |||| |||| | ||||||||||||||| |||||||||||| | ||||| || ||||| || |||| |||||||||||||| ||||||| |
|
|
| T |
2011841 |
atccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcg |
2011742 |
T |
|
| Q |
122 |
ggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtag |
221 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||| |||||| |||||||||| ||||| |
|
|
| T |
2011741 |
gtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtag |
2011642 |
T |
|
| Q |
222 |
cagttcatctagtgcaggatatctttcagcagaaaatgacattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggtttt |
321 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||||||| |||| |||| || ||||||||||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
2011641 |
tagttcatctaatgcagcatatctttcagcacaaaatgatgttgatgctttacaatttttaccatctgggtttttggagagaaccaaagaggaaggtttt |
2011542 |
T |
|
| Q |
322 |
gttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgt |
421 |
Q |
| |
|
|| |||||||||||||| || |||||||||||||| ||||| | ||| |||| || ||||||| ||| ||||| |||| ||||| ||||| |||||| |
|
|
| T |
2011541 |
gtcattacatcatgggcacctcagattcaaatccttagtcatagttcagttggcgggttcttgagtcactgtggttggagctcaacacttgaaagtgtgg |
2011442 |
T |
|
| Q |
422 |
tgcatggtgtgccactaatcacatggcct |
450 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |
|
|
| T |
2011441 |
ttcatggggtgccactaatcacatggcct |
2011413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 43 - 450
Target Start/End: Complemental strand, 2018602 - 2018201
Alignment:
| Q |
43 |
ggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcac |
142 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||| |||||||| |||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||| | |
|
|
| T |
2018602 |
ggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgc |
2018503 |
T |
|
| Q |
143 |
acgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggata |
242 |
Q |
| |
|
| ||||||||| ||||||||||| |||||||||||||||||| | ||||||| |||||| | || |||| |||| | || | | ||| | ||| |
|
|
| T |
2018502 |
aagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggttgtaagatcaccaagtaata---cagccaatgctgcata |
2018406 |
T |
|
| Q |
243 |
tctttcagcagaaaatgacattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccg |
342 |
Q |
| |
|
|||||||||| ||| ||||| |||| || |||||||| || |||||||||||||||| ||||| |||| | |||||| |||||||||| || |
|
|
| T |
2018405 |
tctttcagcatctgatg---ttgaccctttacaatttttaccttcagggttcttggagagaaaaaaggaacaagggatggttattccatcatgggcacca |
2018309 |
T |
|
| Q |
343 |
cagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatca |
442 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2018308 |
cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca |
2018209 |
T |
|
| Q |
443 |
catggcct |
450 |
Q |
| |
|
|||||||| |
|
|
| T |
2018208 |
catggcct |
2018201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 2015244 - 2014818
Alignment:
| Q |
18 |
cattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatct |
117 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||||| || || |||||||| |||||||| ||||| | |||||| |||||| ||||||| ||| |
|
|
| T |
2015244 |
cattatccaaacactaacaacatctggtgatgatgctaataagtttgaatgtctggcatggttggacaaacaacggccttgttcagttctgtatgtgtct |
2015145 |
T |
|
| Q |
118 |
ttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccga |
217 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||| ||||||||||| |||||||||||||||||| | ||||||| |||||| | || |||| | |
|
|
| T |
2015144 |
ttcgggagtggtggaacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggttgtaagatcaccaa |
2015045 |
T |
|
| Q |
218 |
gtagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaagg |
317 |
Q |
| |
|
||| | || | | ||| | ||||||||||||| ||| ||||| |||| || |||||||| || ||||||||||||||||| ||||| |||| |
|
|
| T |
2015044 |
gtaata---cagccaatgctgcatatctttcagcatctgatg---ttgaccctttacaatttttaccttcagggttcttggagagaacaaaggaacaagg |
2014951 |
T |
|
| Q |
318 |
ttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagt |
417 |
Q |
| |
|
| |||||| |||||||||| || |||||||||||||| |||||| ||| ||||||| ||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
2014950 |
gatggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaatgcttgagagt |
2014851 |
T |
|
| Q |
418 |
gtgttgcatggtgtgccactaatcacatggcct |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2014850 |
gtgttgcatggtgtgccactaatcacatggcct |
2014818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 137 - 450
Target Start/End: Original strand, 2436704 - 2437023
Alignment:
| Q |
137 |
tttcacacgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgc |
236 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||| |||||| ||||||| | ||||||| |||||| | ||||||| | ||| |||||||||||||| |
|
|
| T |
2436704 |
tttcacaagaacaaattgttgagctggctttcggtctggaatcgagtaatcagaaattcttatgggttgtaagagcaccaaatagtagttcatctagtgc |
2436803 |
T |
|
| Q |
237 |
aggata----tc--tttcagcagaaaatgacattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattaca |
330 |
Q |
| |
|
|| ||| || |||||||| ||||||| ||||| ||||||| |||||||||| ||||||| | |||||||||||||| |||| | |||||| || |
|
|
| T |
2436804 |
agcatacttttcagtttcagcacaaaatgatgttgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattcca |
2436903 |
T |
|
| Q |
331 |
tcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtg |
430 |
Q |
| |
|
|||||||| || ||| |||||||||| ||||||| ||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2436904 |
tcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgtggtgcatggtg |
2437003 |
T |
|
| Q |
431 |
tgccactaatcacatggcct |
450 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2437004 |
tgccactaatcacatggcct |
2437023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 1963185 - 1963611
Alignment:
| Q |
18 |
cattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatct |
117 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||||| || ||||||||| | |||||||| ||||| ||||| |||||||||||||| ||| |
|
|
| T |
1963185 |
cattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgacatggttggacaaacaatgtccttgttcagttttgtatgtttct |
1963284 |
T |
|
| Q |
118 |
ttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccga |
217 |
Q |
| |
|
|| || |||||||| |||||||| || |||||||||| ||| ||||||| |||||||||||||||||| | ||||||| |||||| | |||| || | |
|
|
| T |
1963285 |
tttggtagtggtggcacactttcgcaagaacaaattgatgagttggctttgggtttggaattgagtaatcataaattcttatgggttgtaagagctccaa |
1963384 |
T |
|
| Q |
218 |
gtagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaagg |
317 |
Q |
| |
|
|||| | || | | ||| | ||||||||||||| ||| |||| |||| |||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
1963385 |
gtagta---cagcaaatgctgcatatctttcagcatctgatg---ttgatcctttacagtttttaccatctgggtttttggagagaaccaaggaacaagg |
1963478 |
T |
|
| Q |
318 |
ttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagt |
417 |
Q |
| |
|
| ||| || |||||||||| || |||||||||||||| ||||||| || |||||||| || ||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
1963479 |
gatggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaacccttgagagt |
1963578 |
T |
|
| Q |
418 |
gtgttgcatggtgtgccactaatcacatggcct |
450 |
Q |
| |
|
||| || ||||||||||||||||||| |||||| |
|
|
| T |
1963579 |
gtggtgtatggtgtgccactaatcacttggcct |
1963611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 417
Target Start/End: Complemental strand, 3770260 - 3770193
Alignment:
| Q |
350 |
aaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagt |
417 |
Q |
| |
|
|||||||||||||||| |||| |||||||| || || |||||||| ||||||||||| ||||||||| |
|
|
| T |
3770260 |
aaatcctaagtcacaattcaacaggtggatttttaacacattgtggttggaattcaacacttgagagt |
3770193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 434
Target Start/End: Complemental strand, 10201937 - 10201869
Alignment:
| Q |
366 |
ctcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgcc |
434 |
Q |
| |
|
||||||||| || || ||| ||||||||| ||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
10201937 |
ctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc |
10201869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 434
Target Start/End: Complemental strand, 10209010 - 10208942
Alignment:
| Q |
366 |
ctcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgcc |
434 |
Q |
| |
|
||||||||| || || ||| ||||||||| ||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
10209010 |
ctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc |
10208942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 417
Target Start/End: Original strand, 3707935 - 3708002
Alignment:
| Q |
350 |
aaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagt |
417 |
Q |
| |
|
|||||||||||||||| |||| |||||||| || || |||||||| |||||||| || ||||||||| |
|
|
| T |
3707935 |
aaatcctaagtcacaattcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagt |
3708002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 417
Target Start/End: Complemental strand, 3778002 - 3777860
Alignment:
| Q |
275 |
agtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattgg |
374 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| || |||| || ||| || | | ||||| ||||||| |||||||||||| |||| |||| || |
|
|
| T |
3778002 |
agtttttaccacaagggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaagccacatttcaaccgg |
3777903 |
T |
|
| Q |
375 |
tggattcttgactcattgtggctggaattcaacccttgagagt |
417 |
Q |
| |
|
|||||| || || |||||||| |||||||| || || |||||| |
|
|
| T |
3777902 |
tggatttttaacacattgtggttggaattcgacactggagagt |
3777860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 416
Target Start/End: Complemental strand, 33005188 - 33005106
Alignment:
| Q |
334 |
tgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagag |
416 |
Q |
| |
|
||||| || |||| |||||||||||| |||| |||| ||||||||| || || |||||||| ||||||||||| || ||||| |
|
|
| T |
33005188 |
tgggcaccacagactcaaatcctaagccacacttcaactggtggatttttaacacattgtggttggaattcaacactcgagag |
33005106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 62 - 453
Target Start/End: Original strand, 5902402 - 5902790
Alignment:
| Q |
62 |
tggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagct |
161 |
Q |
| |
|
||||||||||| | ||||| ||||||| || ||||| |||||||||||||| ||||| || ||||||||| |||||||||| |||||||||| ||| | |
|
|
| T |
5902402 |
tggagtgtctgacatggttacataaacaacaaccttgttcagttttgtatgtttcttttggaagtggtggtgcactttcacaagaacaaattgatgagtt |
5902501 |
T |
|
| Q |
162 |
ggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgac |
261 |
Q |
| |
|
|||| | |||||||||||||||||| | ||||||| |||||| | ||||||| ||||| |||| | |||| | ||||||||||||||||||||| |
|
|
| T |
5902502 |
ggctattggtttggaattgagtaatcataaattcttatgggttgtaagagcaccaagtag---ttcagccagtggtgcatatctttcagcagaaaatgat |
5902598 |
T |
|
| Q |
262 |
attgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtc |
361 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||| |||| | |||||| |||||||||| || |||||| ||| || |||| |
|
|
| T |
5902599 |
gttgatcttttgcagtttttaccacctgggttcttggagagaaccaaggagcaagggatggttattccatcatgggcacctcagattgaaacacttagtc |
5902698 |
T |
|
| Q |
362 |
acaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatcacatggcctttg |
453 |
Q |
| |
|
||| ||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5902699 |
acagatcagttggtggattcttgagtcactgtggctggaattcaatccttgagagtgtgatgcatggtgtgccactaatcacatggcctttg |
5902790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 62 - 450
Target Start/End: Original strand, 5905886 - 5906271
Alignment:
| Q |
62 |
tggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagct |
161 |
Q |
| |
|
|||||||| || | ||||| ||||||||||||||||| |||||||||||||| ||||| || || |||||| |||||||||| ||||||| || ||||| |
|
|
| T |
5905886 |
tggagtgtttgacatggttagataaacagcagccttgttcagttttgtatgtttcttttggaagcggtggtgcactttcacaagaacaaactgatgagct |
5905985 |
T |
|
| Q |
162 |
ggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgac |
261 |
Q |
| |
|
||| | |||||||||||||||||| | ||||||| |||||| | ||||||| ||||| |||| | ||| | ||||||||||||| |||| || |
|
|
| T |
5905986 |
agctattggtttggaattgagtaatcataaattcttatgggttgtaagagcaccaagtag---ttcagcatgtggtgcatatctttcagcacaaaacgat |
5906082 |
T |
|
| Q |
262 |
attgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtc |
361 |
Q |
| |
|
|||| || |||| ||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||| || |||||| ||||||| |||| |
|
|
| T |
5906083 |
gttgatctttcgcaggttttaccatctgggttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtc |
5906182 |
T |
|
| Q |
362 |
acaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatcacatggcct |
450 |
Q |
| |
|
||| ||| ||||||||||||||| ||||||||| |||| ||||| ||||||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
5906183 |
acatatcagttggtggattcttgagtcattgtggttggagttcaatccttgagagcgcgatgcatggtgtgccactaatcacatggcct |
5906271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 408
Target Start/End: Original strand, 3516 - 3557
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3516 |
tcaattggtggattcttgactcattgtggatggaattcaacc |
3557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 408
Target Start/End: Complemental strand, 4461458 - 4461417
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4461458 |
tcaattggtggattcttgactcattgtggatggaattcaacc |
4461417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 4622476 - 4622436
Alignment:
| Q |
368 |
caattggtggattcttgactcattgtggctggaattcaacc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4622476 |
caattggtggattcttgactcattgtggatggaattcaacc |
4622436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 408
Target Start/End: Complemental strand, 4557460 - 4557419
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
4557460 |
tcaattggtggattcttgactcattgtggatggaactcaacc |
4557419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 408
Target Start/End: Complemental strand, 4592566 - 4592525
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
4592566 |
tcaattggtggattcttgactcattgtggatggaactcaacc |
4592525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 406
Target Start/End: Original strand, 4490152 - 4490191
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaa |
406 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
4490152 |
tcaattggtggattcttgactcattgtggatggaactcaa |
4490191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 408
Target Start/End: Original strand, 4266966 - 4267004
Alignment:
| Q |
370 |
attggtggattcttgactcattgtggctggaattcaacc |
408 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
4266966 |
attggtggattcttgactcattgcggatggaattcaacc |
4267004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 413
Target Start/End: Original strand, 4299618 - 4299664
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacccttga |
413 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| |||||| |||| |
|
|
| T |
4299618 |
tcaattggtggattcttgactcactgtggatggaactcaaccattga |
4299664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 413
Target Start/End: Complemental strand, 4626286 - 4626240
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacccttga |
413 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| |||||| |||| |
|
|
| T |
4626286 |
tcaattggtggattcttaactcattgtggatggaactcaaccattga |
4626240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 4493287 - 4493250
Alignment:
| Q |
370 |
attggtggattcttgactcattgtggctggaattcaac |
407 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4493287 |
attggtggattcttgactcattgtggatggaactcaac |
4493250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 408
Target Start/End: Complemental strand, 4506192 - 4506151
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacc |
408 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
4506192 |
tcaattggtggattcttgactcattgcggatggaactcaacc |
4506151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 408
Target Start/End: Complemental strand, 4585971 - 4585930
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacc |
408 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
4585971 |
tcaattggtggattcttgactcactgtggatggaactcaacc |
4585930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 408
Target Start/End: Original strand, 4613515 - 4613556
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacc |
408 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
4613515 |
tcaattggcggattcttgactcattgtggatggaactcaacc |
4613556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 845059 - 845007
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgt |
419 |
Q |
| |
|
||||||||||| || || ||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
845059 |
tcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt |
845007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 870343 - 870291
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgt |
419 |
Q |
| |
|
||||||||||| || || ||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
870343 |
tcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt |
870291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 413
Target Start/End: Original strand, 41511444 - 41511490
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacccttga |
413 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
41511444 |
tcaattggtggatttttgactcattgtggttggaattcaacacttga |
41511490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 3086755 - 3086715
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaac |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
3086755 |
tcaattggtggattcttgactcattgtggatggaactcaac |
3086715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 413
Target Start/End: Original strand, 4483 - 4529
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacccttga |
413 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| |||||| |||| |
|
|
| T |
4483 |
tcaattggtggattcttgactcattgcggatggaactcaaccattga |
4529 |
T |
|
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Target: scaffold0184 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 11687 - 11635
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgt |
419 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
11687 |
tcaattggtgcatttttgactcattgtggttggaattcagttcttgagagtgt |
11635 |
T |
|
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 20155250 - 20155290
Alignment:
| Q |
367 |
tcaattggtggattcttgactcattgtggctggaattcaac |
407 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
20155250 |
tcaattggaggattcttgacacattgtggatggaattcaac |
20155290 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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