View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16601_high_13 (Length: 307)

Name: NF16601_high_13
Description: NF16601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16601_high_13
NF16601_high_13
[»] scaffold0428 (3 HSPs)
scaffold0428 (15-294)||(2315-2594)
scaffold0428 (15-240)||(15059-15278)
scaffold0428 (172-241)||(13827-13896)
[»] chr6 (11 HSPs)
chr6 (15-294)||(33258194-33258473)
chr6 (20-294)||(33414568-33414840)
chr6 (72-270)||(31564920-31565117)
chr6 (97-294)||(33269541-33269740)
chr6 (15-164)||(33293102-33293251)
chr6 (174-273)||(33384049-33384148)
chr6 (20-271)||(33395074-33395326)
chr6 (15-240)||(33278975-33279194)
chr6 (26-118)||(28872999-28873091)
chr6 (181-254)||(33406911-33406984)
chr6 (172-241)||(33280357-33280426)
[»] chr2 (1 HSPs)
chr2 (15-273)||(17447703-17447961)


Alignment Details
Target: scaffold0428 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 2594 - 2315
Alignment:
Q  15 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2594 aaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 2495  T
Q  115 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcgctcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2494 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 2395  T
Q  215 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2394 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 2315  T

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Target: scaffold0428; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 15059 - 15278
Alignment:
Q  15 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 114  Q
    |||| |||| |||| |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| |||     
T  15059 aaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatca 15157  T
Q  115 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcgctcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 214  Q
    ||||| ||||||||||| |  |||  |    |||||||||| |||||||| |  || ||||||||||||  |||||||||||||||| ||| ||||||||    
T  15158 gctgacaagaaatccggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaacc 15252  T
Q  215 gactttgttggcagaagtgagaaatt 240  Q
    ||||||| |||||||||| |||||||    
T  15253 gactttgatggcagaagttagaaatt 15278  T

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Target: scaffold0428; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 13827 - 13896
Alignment:
Q  172 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaattt 241  Q
    |||||||| ||||||| ||||| ||||||| ||| |||| || |||||| ||||||||||||||||||||    
T  13827 cgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaattt 13896  T

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Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 33258473 - 33258194
Alignment:
Q  15 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258473 aaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 33258374  T
Q  115 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcgctcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33258373 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 33258274  T
Q  215 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258273 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 33258194  T

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Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 33414840 - 33414568
Alignment:
Q  20 gtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctga 119  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  33414840 gtgcagggatgatggactgtaagaaagctcttgctgaaacggaaggcgatcttgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctga 33414741  T
Q  120 taagaaatccgggagactagcagaagaaggaagaatcggtacatatcgctcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactt 219  Q
    |||||||||||| ||||||||||  |||||||||||||||||||| |  || |||| |||  |||||||||||||||||||||||| ||||||| |||||    
T  33414740 taagaaatccggaagactagcagctgaaggaagaatcggtacata-cattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactt 33414642  T
Q  220 tgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 294  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||  || ||||||||||||    
T  33414641 tgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggttc 33414568  T

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Target: chr6; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 72 - 270
Target Start/End: Original strand, 31564920 - 31565117
Alignment:
Q  72 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcgctcg 171  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  |||||||||||||||||||| |  ||     
T  31564920 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacata-cattca 31565018  T
Q  172 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgca 270  Q
    |||||||| |||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||||||| | ||||||||||||||    
T  31565019 cgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 97 - 294
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  97 aaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatat---cgctcgcgattcacacattggtgttcta 193  Q
    ||||||||||||||||||||||||||||| || |  ||||||||||  |||| ||||||||||||||||   |  || | || ||  ||| |||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  194 attgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggtt 293  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||  || |||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggtt 33269542  T

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Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 33293251 - 33293102
Alignment:
Q  15 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 114  Q
    |||| |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  | ||||||| ||||  |||||||||||||||| |    
T  33293251 aaccggtgctgggatgatggactgtaagaaagctcatgctgaaacagaaggtgatcttgaaaaggtgaaagcatacctcagaaaaaagggtctctcattc 33293152  T
Q  115 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacata 164  Q
    ||||||||||||||| | ||||||||||  ||||||||||| ||||||||    
T  33293151 gctgataagaaatccagaagactagcagctgaaggaagaattggtacata 33293102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 174 - 273
Target Start/End: Complemental strand, 33384148 - 33384049
Alignment:
Q  174 attcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 273  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  33384148 attcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgcaatgcaagt 33384049  T

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Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 33395326 - 33395074
Alignment:
Q  20 gtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctga 119  Q
    |||| ||||| |||||||||||||||||    ||||||||  ||||||||||||||||| | ||| |||| || |  | ||||||||||||||| |||||    
T  33395326 gtgctgggattatggactgtaagaaagccttagccgaaactaaaggtgatcttgaaaaggcccaatcataccttagaacaaagggtctctcatcagctga 33395227  T
Q  120 taagaaatccgggagactagcagaagaaggaagaatcggtacatatcgctcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactt 219  Q
     ||||||||||| || |||||||  |||||||||||||||| ||| |  |  |||| ||| |||   |||||| |||||||||||| |||||||||||||    
T  33395226 caagaaatccggtaggctagcagctgaaggaagaatcggtaaata-cattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactt 33395128  T
Q  220 tgttgg--cagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 271  Q
    ||||||  ||||||||| | ||| |||||||||||||  |||||| ||||||||    
T  33395127 tgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaa 33395074  T

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Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 33279194 - 33278975
Alignment:
Q  15 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 114  Q
    |||| |||| |||| |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| |||     
T  33279194 aaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatca 33279096  T
Q  115 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcgctcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 214  Q
    ||||| ||||||||||| |  |||  |    |||||||||| |||||||| |  || ||||||||||||  |||||||||||||||| ||| ||||||||    
T  33279095 gctgacaagaaatccggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaacc 33279001  T
Q  215 gactttgttggcagaagtgagaaatt 240  Q
    ||||||| |||||||||| |||||||    
T  33279000 gactttgatggcagaagttagaaatt 33278975  T

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Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 28872999 - 28873091
Alignment:
Q  26 ggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctg 118  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||| || ||||||| ||||   |||||||||||||||| ||||    
T  28872999 ggatgatggactgtaagaaagcccttgccgaaacagaaggtgatcttgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 33406984 - 33406911
Alignment:
Q  181 cattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttg 254  Q
    |||| ||||| |||||| |||||||  |||||||||||||||||||||||||||| ||||  ||||||||||||    
T  33406984 cattagtgttataattgtagtgaactatgaaaccgactttgttggcagaagtgagcaattcgaggagttggttg 33406911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 33280426 - 33280357
Alignment:
Q  172 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaattt 241  Q
    |||||||| ||||||| ||||| ||||||| ||| |||| || |||||| ||||||||||||||||||||    
T  33280426 cgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaattt 33280357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 17447703 - 17447961
Alignment:
Q  15 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaaggg-tctctcatc 113  Q
    |||| |||| ||||| ||||||||||||||||| | ||||||||| |||||||||||||||||| |||||||||| ||||  |||||||| |||||||||    
T  17447703 aaccggtgctgggattatggactgtaagaaagcccttgccgaaactgaaggtgatcttgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatc 17447802  T
Q  114 cgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcgctcgcgattcacacattggtgttctaattgaagtgaacggtgaaac 213  Q
    |||||||||||||||||| ||||| ||||  |||||||||||||||||||| |  || |||| ||| ||| |||| |||||||||| |||||  ||||||    
T  17447803 cgctgataagaaatccggaagactggcagctgaaggaagaatcggtacata-cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaac 17447901  T
Q  214 cgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 273  Q
    |||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||    
T  17447902 cgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagt 17447961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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